Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02688 ATGGACAATTCCACTCAAGAATCCCACCTCCGATCCGACAACAACTCCGTCACCTACGACTCCCCCCACCCTCTCTACGCCATGGCTTTCTCTTCAAACCCCAATCCCCAACACCACCAACGAATCGCCGTCGGTAGTTTCCTCGAAGAATACACCAACCGCATCGACATCCTCTCTTTCAACCCCGACACTCTCTCCATCAAACCCCAACCTTCACTCTCCTTCGATCACCCTTACCCACCTACCAAACTCATGTTCCATCCCTCAACCCATTCCACCCTCCAAAAATCATCCTCCGACCTCCTCGCTACCTCCGGCGACTATCTCCGTCTCTGGGAAGTTCGCGAGAATTCCGTCGAGGCCATTTCTCTTTTCAACAACAGCAAAACCAGCGAGTTTTGCGCTCCGTTAACCTCCTTCGACTGGAACGAAATTGAGCCGAAACGAATTGGGACTTCGAGTATTGACACCACTTGTACTATCTGGGACATTGAAAGAGGGGTTGTGGAAACGCAGCTTATTGCTCATGATAAAGAGGTTTACGATATCGCTTGGGGGGAATCGAGAGTTTTCGCTTCGGTTTCTGCTGATGGGTCTGTTAGGATCTTTGATTTAAGGGACAAAGAGCATTCTACTATTATCTATGAGAGTCCTCAACCGGATACCCCTTTGCTTCGTTTGGCTTGGAACAAGAAGGATTTGAGATACATGGCGACTATTTTGATGGATAGTAATAAAGTTGTGATTTTGGATATTAGATCACCCACCACGCCTGTCGCGGAATTGGAGAGGCATCGGGCGGGTGTTAATGCGATTGCTTGGGCTCCAAGAAGCTCGAAGCATATTTGTTCGGCCGGAGATGATACACAGGCTCTTATGTGGGAGTTGCCTACTGTGGCGGGTCCGAACGGGATTGATCCAATGTCTATGTATTCTTCTGGTTATGAGATTAATCAGCTTCAGTGGTCTGCGGCTCAGCCGGATTGGATTGCAATTGCTTTTGCGAACAAGATGCAGCTTTTGAGGGTTTGA 1032 0.4874 MDNSTQESHLRSDNNSVTYDSPHPLYAMAFSSNPNPQHHQRIAVGSFLEEYTNRIDILSFNPDTLSIKPQPSLSFDHPYPPTKLMFHPSTHSTLQKSSSDLLATSGDYLRLWEVRENSVEAISLFNNSKTSEFCAPLTSFDWNEIEPKRIGTSSIDTTCTIWDIERGVVETQLIAHDKEVYDIAWGESRVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKKDLRYMATILMDSNKVVILDIRSPTTPVAELERHRAGVNAIAWAPRSSKHICSAGDDTQALMWELPTVAGPNGIDPMSMYSSGYEINQLQWSAAQPDWIAIAFANKMQLLRV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02688 343 FunFam WD repeat-containing protein LWD1 12 342 - -
Vivi3g02688 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 296 IPR001680 GO:0005515
Vivi3g02688 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 213 IPR001680 GO:0005515
Vivi3g02688 343 Gene3D - 2 342 IPR015943 GO:0005515
Vivi3g02688 343 PANTHER WD REPEAT CONTAINING PROTEIN 6 343 IPR045159 -
Vivi3g02688 343 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Vivi3g02688 343 SMART WD40_4 124 163 IPR001680 GO:0005515
Vivi3g02688 343 SMART WD40_4 68 113 IPR001680 GO:0005515
Vivi3g02688 343 SMART WD40_4 166 204 IPR001680 GO:0005515
Vivi3g02688 343 SMART WD40_4 255 295 IPR001680 GO:0005515
Vivi3g02688 343 SUPERFAMILY WD40 repeat-like 22 302 IPR036322 GO:0005515
Vivi3g02688 343 Pfam WD domain, G-beta repeat 173 204 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02688 Vivi-Chr3 44992132 44993816 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02688 K11805 - cpap:110823444 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02688 3 44992132 44993816 Vivi3g02688 3 44992132 44993816 ECH