Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02478 ATGAGAGGAACAATGGGAACTTCTCCTCGTTCTGTTGAAACAAGACACCGCTTGCCAGCATCAATTGAAGATTTATACAAGAGAAGAGTGTCGAAAACTAAAACGAAAGATGTAGAGAAGCCTTTCCACTTATCTATACAAGATAAGAGCTCAAGATGGAAGTTTTCTTTCTTAAAACTTATCTTGTTGATAACCATTTCCGCCACTTTTGTTATGTTCATCTATTCTCCGGATGTTTACAATACCAGCCATTTATCACGATCTGGCGCAAGGTGGATATGGGGAGGCTCGGATCCTCGGTATGTTTCCAATGTAGATACCGATTGGGATGATATAGTGAAAATCACCGAAAAACTGATAGGAAAAAATGAATTTCAAGGCATTGGACTTGTAAATTTCAACAAGACTGAGATTTCTCACTGGAAGCATAATTTTCAAGATGCCACACATGTTGTTATGCATCTGGAGTATGCTGCAAACAATGTGACATGGGAGTCTCTATATCCTGAATGGATTGATGAAGAAGAAGAAACTGAAGTTCCCGTTTGCCCTTCTCTACCGAGTCTTGTATCTCCCGGGACAAGACTCAATGTCATTGCTGTCAAACTACCTTGTAGGAATGGAGGGAATTGGTCTAGAGATGTGGCTCGTTTGCACCTGCAGCTTGCAGCGGCTGGCCTAGCTACCTCTTTTAAAGGCAATTACCCGATTTATGTGCTCTTCATTACCGACTGTTTTCCAATACCAAATCTGTTTACCTGCAAAGAACTAGTTGGACGTGAAGGAAATGTATGGTTATACAAACCAAACTTGAGTGTTTTGAGAGAAAAAGTCCAGCTTCCTGTTGGATCATGCGAGCTTGCACTTCCTATGAGAGGCAGAGAACTGGCTTACAATGGAAATGCTCCAAGAGAAGCATATGCGACAATTCTGCATTCAGCTCATGTTTATGTTTGTGGAGCCATAGCCGCAGCTCAAAGTATTCGAATGTCAGGATCAACTAGAGATCTTGTAATACTAGTTGATGAGACAATCAGTGGATATCACAGAAGTGGATTGGAAGCAGCAGGGTGGAAGGTCAGAACGATACAGAGAATCAGAAACCCGAAAGCTGAAAAAGATGCTTACAATGAATGGAACTACAGCAAATTCAGGTTATGGCAGCTCACAGATTACGACAAGATAATATTCATCGATGCAGATTTACTCATACTCAGAAACATAGATTTTCTTTTTGGGATGCCGGAAATTACTGCTACCGGTAACAACGCCACTTTGTTTAACTCGGGTGTCATGGTGGTTGAGCCATCGAACTGCACATTTCAGCTTCTGATGGATCATATAAATGAGATTGAGTCTTACAATGGAGGGGACCAAGGGTATTTGAATGAAATATTTACATGGTGGCACAGGATACCAAGACACATGAACTTCTTGAAGCATTTTTGGATTGGCGACGAGGAAGAGAAGAAGCAAATGAAAACCATGTTGTTTGGTGCTGAGCCACCAGTTCTCTATGTGCTTCACTATCTAGGTTTGAAGCCATGGTTATGTTTCAGGGACTATGATTGTAACTGGAATGCTGATATATTTCATGAGTTTACAAGTGATGTTGCGCACGCAAAGTGGTGGAAGGTGCATGATGCAATGCCTGAGCTTTTACAACAGTTTTGTCTGTTGCAGTCAAAGCAGAAGGCACAGTTGGAGTGGGATCGGAGACAAGCTGAAATAGCAAACTACACAGACGGGCATTGGCGAATCAAAGTTAAAGATCGACGCTTGAAGAAGTGTATAGATAATCTGTGTAACTGGAAAAGCATGTTGCGGCATTGGGGAGAGAGTAACTGGACAGATGATGAGTCTTTTACTCCAACACCTCCCACAGTTACGACATCATCTCTTCCTGCTTTATGA 1914 0.418 MRGTMGTSPRSVETRHRLPASIEDLYKRRVSKTKTKDVEKPFHLSIQDKSSRWKFSFLKLILLITISATFVMFIYSPDVYNTSHLSRSGARWIWGGSDPRYVSNVDTDWDDIVKITEKLIGKNEFQGIGLVNFNKTEISHWKHNFQDATHVVMHLEYAANNVTWESLYPEWIDEEEETEVPVCPSLPSLVSPGTRLNVIAVKLPCRNGGNWSRDVARLHLQLAAAGLATSFKGNYPIYVLFITDCFPIPNLFTCKELVGREGNVWLYKPNLSVLREKVQLPVGSCELALPMRGRELAYNGNAPREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISGYHRSGLEAAGWKVRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEITATGNNATLFNSGVMVVEPSNCTFQLLMDHINEIESYNGGDQGYLNEIFTWWHRIPRHMNFLKHFWIGDEEEKKQMKTMLFGAEPPVLYVLHYLGLKPWLCFRDYDCNWNADIFHEFTSDVAHAKWWKVHDAMPELLQQFCLLQSKQKAQLEWDRRQAEIANYTDGHWRIKVKDRRLKKCIDNLCNWKSMLRHWGESNWTDDESFTPTPPTVTTSSLPAL 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02478 637 SUPERFAMILY Nucleotide-diphospho-sugar transferases 304 550 IPR029044 -
Vivi3g02478 637 PANTHER GLYCOGENIN SUBFAMILY MEMBER 211 597 - -
Vivi3g02478 637 FunFam Hexosyltransferase 302 554 - -
Vivi3g02478 637 MobiDBLite consensus disorder prediction 618 637 - -
Vivi3g02478 637 CDD GT8_Glycogenin 305 550 - -
Vivi3g02478 637 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 303 552 IPR029044 -
Vivi3g02478 637 Pfam Glycosyl transferase family 8 311 517 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02478 Vivi-Chr3 41444961 41449640 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02478 13 636 Glycosyltransferase AT3G18660 67.857 0.0 886
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02478 K20890 - gmx:100780439 1184.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02478 3 41444961 41449640 Vivi3g02478 3 41444961 41449640 ECH