Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02445 ATGAGAATCCAGATGAAGATGAAATCCTATTCTTCATTTTTCTTCATGCTCCTCATTGCAGCCTTTAGCAGCATACAGGTAAGCTTAGCAGACTGTGATAATCTACAGGACACATGCCCCACATCAGAAAAAAAGACAGCATTCATCAATGGCCTCTCCTGCAATAACCCAGCTAACAAATCTGCTCATGATTTCAAGACCATGGAATTAAGCAAAGCTGGTTCAAGAGACACGTTTGGTTCATCAGTCAACATTGTCACTGCTTCAAAGTTCCCTGGCCTCAACACTCTTGGGATCTCAATCGGTAGAACGGACATTGAAACAGATGGAATCGTGAACCTCCATAATCATCCAAGAGCTAGCGAGATGATCTTTGTTAACGAAGGTGTATTGGAAGTTGGGTTTCTCGATACACAAAACAAGCTTTTCCAGAAGGCTTTGAAGGAAGGTGATGTGTTTGTGCTCCCTAAGGGCTTGTTCCATTACTTTCTAAATCGCGGTGTAGAAGTTGCAACTGTGTTTTCTGTGTTTAATAGCCAAAATCCAGGGTTCCAGTCTCTTACACCCAAACCTTCTACTTCTGAATCAGTTGAGAAGATAAAGAGGAAGCTTGTATCACTTTCTGAATTAGAGCTTGAAAGTGTAAATGACTTGAGTTTGGCCGTGTCGGAGATTATTTACAGTTAA 687 0.4134 MRIQMKMKSYSSFFFMLLIAAFSSIQVSLADCDNLQDTCPTSEKKTAFINGLSCNNPANKSAHDFKTMELSKAGSRDTFGSSVNIVTASKFPGLNTLGISIGRTDIETDGIVNLHNHPRASEMIFVNEGVLEVGFLDTQNKLFQKALKEGDVFVLPKGLFHYFLNRGVEVATVFSVFNSQNPGFQSLTPKPSTSESVEKIKRKLVSLSELELESVNDLSLAVSEIIYS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02445 228 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 24 190 - -
Vivi3g02445 228 CDD cupin_OxOx 31 187 IPR001929 GO:0030145
Vivi3g02445 228 Pfam Cupin 79 191 IPR006045 -
Vivi3g02445 228 SMART Cupin_1_3 71 201 IPR006045 -
Vivi3g02445 228 FunFam germin-like protein subfamily 2 member 1 30 219 - -
Vivi3g02445 228 SUPERFAMILY RmlC-like cupins 47 188 IPR011051 -
Vivi3g02445 228 Gene3D Jelly Rolls 30 217 IPR014710 -
Vivi3g02445 228 PRINTS Germin signature 115 135 IPR001929 GO:0030145
Vivi3g02445 228 PRINTS Germin signature 178 193 IPR001929 GO:0030145
Vivi3g02445 228 PRINTS Germin signature 145 165 IPR001929 GO:0030145
Vivi3g02445 228 ProSitePatterns Germin family signature. 110 123 IPR019780 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02445 Vivi-Chr3 41112960 41114078 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02445 13 189 Miscellaneous Gene Families AT3G05930 42.458 5.11e-37 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02445 - - mtr:112420373 349.362