Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02444 ATGGAATCGGAGAAAACAACCACTCTCAATCTCATCTTCGGACCATACACCAGACCTTCATACCCAATCCTCCTTCTCATCTTCACCTTCCTCGCCATCCTCTCTCTCCAATTCTCCTCCCGCTCTCTCTTCCCCCTCTCCATCCTCCTCTCCCAATCACCACAACACTCCCTCAATCCCACCACCTGCTCTTCTTTCTTTCACGAAGTTCCTCCTAGAAAAATTATCAAGTCGATCGTTGATTTCGGCGGCGTCGGCGATGGCAAAACCTCCAACACCCAATCGTTTCGAAACGCGATTCGATACATGCAGCGTTTTCATGGTAAAGGTGGGTCCCAGCTTAATATCCCCGCTGGAACGTGGCTTACTGGTAGCTTTAATCTCACCAGTGATTTCACGCTTTTTCTTCATCACGGTGCGGTTATTTTAGGTTCTCAGGATCCAAAAGAATGGCCTATTATTGAACCTTTGCCATCTTATGGAAGGGGAAGAGAGAGGTTAGGAGGAAGACACATTAGTCTTATACATGCTAATGGAGTCCGTAATGTTGTAATCACAGGAGAAAATGGAACAGTTGATGGTCAAGGGAGGATGTGGTGGGAGCTTTGGTGGAACAGAACATTGGAGCACACAAGAGGCCACCTCCTTGAACTCATGAACTCAGAAAATGTTTTAGTTTCAAACCTCACCTTTAGAGATTCTCCTTTCTGGACCATCCATCCTGTTTACTGCAGTAATGTTGTGATCAAAGGGATGACAATCTTGGCCCCTCTTAATGCCCCAAATACTGATGGCATAGACCCAGACTCGAGTACCAACGTGTGTATTGAAGATAACTACATAGAAAGTGGGGATGATCTTGTAGCCATCAAGAGTGGTTGGGATCAATATGGAATCAACATGGCTAAGCCTAGCACAAACATCATAGTGAGAAGAGTTTCAGGCACTACGCCAACATGCTCTGGAGTAGGAATAGGCAGTGAGATGTCAGGTGGAATTTCAAATATTATAATTGAGAATTTGCACGTGTGGAACTCTGCAGCCGGTGTTCGTATAAAATCTGATAATGGCAGAGGGGGGTATGTAACAAATGTGAGTATAAGCAATATAAGAATGGAGAGGATGAAGATACCAATTAGGTTTAGTAGAGGTTCAAATGATCATCCTGATGATGGGTGGGATTCAAAAGCTGTACCTAGATTTAAAAATATTTCAATCAGCAATGTGGTCAGTGTAAATTCAACAAAAGCTCCAGTTCTGGAAGGTGTAAAGGGTTCATCATTTGAAGGCCTGTGCTTCAAGAATATTACTCTTCTTGGTGTAGCCTTATCTGCTAAATGGCGCTGTGAATATGTCGCTGGTTTTGCTAATGGGGTGTTCCCTGTTCCGTGTCCTGAGTTGCAGAACAATGGCACTTCATCATGGTGTTGA 1431 0.4416 MESEKTTTLNLIFGPYTRPSYPILLLIFTFLAILSLQFSSRSLFPLSILLSQSPQHSLNPTTCSSFFHEVPPRKIIKSIVDFGGVGDGKTSNTQSFRNAIRYMQRFHGKGGSQLNIPAGTWLTGSFNLTSDFTLFLHHGAVILGSQDPKEWPIIEPLPSYGRGRERLGGRHISLIHANGVRNVVITGENGTVDGQGRMWWELWWNRTLEHTRGHLLELMNSENVLVSNLTFRDSPFWTIHPVYCSNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDQYGINMAKPSTNIIVRRVSGTTPTCSGVGIGSEMSGGISNIIIENLHVWNSAAGVRIKSDNGRGGYVTNVSISNIRMERMKIPIRFSRGSNDHPDDGWDSKAVPRFKNISISNVVSVNSTKAPVLEGVKGSSFEGLCFKNITLLGVALSAKWRCEYVAGFANGVFPVPCPELQNNGTSSWC 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02444 476 Gene3D - 57 453 IPR012334 -
Vivi3g02444 476 SMART pbh1 271 303 IPR006626 -
Vivi3g02444 476 SMART pbh1 333 354 IPR006626 -
Vivi3g02444 476 SMART pbh1 362 383 IPR006626 -
Vivi3g02444 476 SMART pbh1 244 270 IPR006626 -
Vivi3g02444 476 SMART pbh1 305 327 IPR006626 -
Vivi3g02444 476 SUPERFAMILY Pectin lyase-like 69 467 IPR011050 -
Vivi3g02444 476 PANTHER PECTIN LYASE-RELATED 33 473 - -
Vivi3g02444 476 Pfam Glycosyl hydrolases family 28 173 453 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02444 Vivi-Chr3 41109438 41112743 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02444 1 476 Glycoside Hydrolase AT4G33440 67.155 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02444 - - gmx:100814190 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02444 3 41109438 41112743 Vivi3g02444 3 41109438 41112743 ECH