Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02443 ATGGATTCGAGTACAACCCAGGAATTCGATTACTTGTTCAAATTATTGATGATTGGTGACTCCGGAGTTGGCAAGAGTAGTCTCCTCCTCTGTTTCACCTCTGATTCTTTCGAAGATCTTTCTCCTACAATTGGTGTTGATTTTAAGGTTAAATATGTTACTATTGGTGATAAGAAGTTGAAGCTTGCAATCTGGGATACAGCTGGTCAAGAGAGATTCAGAACACTTACGAGTTCTTATTACCGAGGTGCACAAGGGATCATTATGGCTTACGATGTTACTCGACGAGATACATTTACAAATCTCTCTGAAGTCTGGGCTAAGGAAATAGACCTTTATTCAACAAATCAGGACTGCATCAAGATGCTTGTTGGAAATAAAGTGGATAAGGAGAGTGATAGAGTTGTGACAAAGAAAGAGGGAGTAGACTTTGCAAGAGAATATGGTTGTCTATTTATTGAATGCAGTGCTAAAACTCGAGTTAACGTACAACAGTGCTTTGAAGAGCTTGTTTTGAAGATTTTAGACACACCGAGCCTCATAGCAGAGGGTTCGAAAGGGGTCAAAAAGAACATTTTTAAGGACAAGGAACTCCAGTCTGATGGAGCCACAAGTGGTTGTTGCTAA 627 0.3987 MDSSTTQEFDYLFKLLMIGDSGVGKSSLLLCFTSDSFEDLSPTIGVDFKVKYVTIGDKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMAYDVTRRDTFTNLSEVWAKEIDLYSTNQDCIKMLVGNKVDKESDRVVTKKEGVDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLIAEGSKGVKKNIFKDKELQSDGATSGCC 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02443 208 FunFam Ras-related protein RABC1 6 208 - -
Vivi3g02443 208 CDD Rab18 13 174 - -
Vivi3g02443 208 ProSiteProfiles small GTPase Ras family profile. 2 208 IPR001806 GO:0003924|GO:0005525
Vivi3g02443 208 Pfam Ras family 14 175 IPR001806 GO:0003924|GO:0005525
Vivi3g02443 208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 181 IPR027417 -
Vivi3g02443 208 PANTHER RAS-RELATED PROTEIN RAB 12 185 - -
Vivi3g02443 208 Gene3D - 5 208 IPR027417 -
Vivi3g02443 208 PRINTS Transforming protein P21 ras signature 13 34 - -
Vivi3g02443 208 PRINTS Transforming protein P21 ras signature 53 75 - -
Vivi3g02443 208 PRINTS Transforming protein P21 ras signature 35 51 - -
Vivi3g02443 208 PRINTS Transforming protein P21 ras signature 152 174 - -
Vivi3g02443 208 PRINTS Transforming protein P21 ras signature 117 130 - -
Vivi3g02443 208 ProSiteProfiles small GTPase Rab1 family profile. 8 208 - -
Vivi3g02443 208 SMART rho_sub_3 15 177 IPR001806 GO:0003924|GO:0005525
Vivi3g02443 208 SMART rab_sub_5 13 177 - -
Vivi3g02443 208 SMART ran_sub_2 18 204 - -
Vivi3g02443 208 SMART ras_sub_4 10 177 - -
Vivi3g02443 208 NCBIfam small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Vivi3g02443 208 ProSiteProfiles small GTPase Rho family profile. 6 175 - -
Vivi3g02443 208 SMART arf_sub_2 1 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02443 Vivi-Chr3 41092742 41098757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02443 14 205 EF-hand Containing Proteins AT5G27540 27.184 1.00e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02443 K07910 - csin:114310177 381.333