Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02249 ATGGATACTAGTGTAACTGTACTATGGTTTTTACTACTTTTCTTTTCTCTCTCTATCCATTCCTCTGAATCCAAATTCATCAGATACAATACTAATGCAACCATTGTTCCTGGGAAGCTCAATGTTCACTTGGTTCCTCACACTCACGATGATGTTGGTTGGTTGAAAACCGTTGATCAGTACTATGTTGGTTCCAACAACTCCATTCAGGTGGCTTGCGTTCAAAATGTGCTTGATTCCCTTATACCGGCTTTGTTGGCAGACAAGAATCGTAAATTCATCTATGTTGAACAGGCTTTCTTCCAGCGTTGGTGGAGAGAGCAGAGTGAATATGTTCAGCAAACAGTCAAGCAGCTGGTCAATTCTGGTCAATTGGAGTTCATAAATGGTGGTATGTGTATGCATGATGAGGCTGCTACACATTACATTGACATGATTGATCAGACAACCCTTGGACATAGATTCATCAAAGACGTACATGCATCAGACGAATTCGGCATAACTCCGAGAATAGGATGGCAAATCGATCCGTTTGGACATTCTGCTGTGCAGGCCTACTTGTTGGGAGCAGAGGTTGGATTTGATTCTTTATTCTTTGGACGGATCGACTACCAAGATCGAGCAAAGAGAAAAGGTGAAAAAAGTCTGGAGGTTGTGTGGCAGGGCTCTAAGAGCTTTGGTTCATCTGCACAGATATTTTCTGGTGCGTTCCCTGAGAATTATGAACCTCCAACAAGTAATTTCTACTTTGAAGTAAATTCTGAATCTCCAATTGTTCAGGACGATATTGATTTGTTCGATTACAATGTCGCTGATCGAGTAAATGATTTTGTCGCAGCTGCAATATCACAGGCCAATATAACGCGCACAAATCATATAATGTGGACAATGGGGACAGATTTCAAGTACCAATATGCACAAACCTGGTTTAGGCAACTAGACAAGTTTATTCATTATGTTAATCAGGATGGACGGGTTCACGCATTATACTCTACCCCGTCAATATATACTGATGCAAAACATGCTGCAAATGAAGCCTGGCCAATCAAGACCGATGACTTCTTTCCGTATGCAGATCGTGTAAATGGTTACTGGACGGGGTATTTTACAAGTAGGCCAGGACTCAAAGGTTATGTTAGATTTTTGAGTGGCTACTACTTGGCAGCAAGGCAGTTGGAGTATTTCAAAGGGAAGAGTGCCTCGAGTCCTAATACTGACTCTTTGGCTGATGCTTTGGCTATTGCGCAACACCATGATGCTGTATCTGGTACAGAAAAGCAGCATGTGGCTAATGATTATGCGAAGCGGCTTTCAATAGGTTACACAGAGGCTGAGAAAGCTGTTGCTGCATCACTTTCTTTCTTGGCAGAAGCAGCAAACAAAACTGATGGTAGGACTCCACAAATTAAATTTCAACAGTGTCCACTTCTTAACATAAGTTACTGTCCTGCATCAGAAGCAGGCTTCTCAGATGGGAAAGACCTGGTTGTCGTCGTTTACAATCCTCTTGGACGGAAAAGAGAGGATGTTATAAGGATTCCTGTTGCCAATGAAAATGTTGTTGTTCGGGATTCGAGTGGGAAAGAAATCCAATCCCAGCTTCTGCCAATTCCTGATGCTTTTCTTGGTTTAAGAAACTACTACGCGAAAGCATACCTAGGAGTTTCTCAAAGTGTAAGCCCTAAATATTGGCTTGCTTTTTCAGCCATTGTTCCTCCACTTGGTTTTAGCACCTACTATGTGTCTAAAGCTAAACAAGCAGCTACTATTTCAGATAGCAATAAATATAAATCAGGGAGTCACAGCGATACGTTTGAAGTAGGCCTAGGAAACTTGAAACTGATTTACTCTGCGAAGGAAGCGAAACTTACTCAATATATTAACACAAAAAGGAAGGTCAAAGAATCTATAGATCAGACATACAAGTTTTACGCCTCTTATGGAGATGACTTTACAGATACTGCTCAGGCATCTGGAGCATATATTTTTCGCCCCAACGGTTCATCGATTCCCATCAATTCCAACAAAAAGTCTCCTCTCACTGTTTTGCGGGGACCAATCGTGCATGAAGTGCATCAGAAGATCAATTCATGGATATACCAGACCACCAGATTATTCAAAGGAAAAGAACATGCTGAAGTTGAGTTTATTGTTGGGCCTATACCGATTGACAACGGAGTTGGCAAAGAAATTGCAACCGAGATTAAAACAAATCTAGAAAGCAGCAAAACCTTCTATACTGATTCTAATGGACGCGATTTCATTGAAAGGGTTCGAGACTATAGAAAAGACTGGAACTTAGAAGTAAATCAACCTGTTGCAGGAAATTATTACCCTATCAATCTTGGAATTTACCTAAAAGATAAACAAAGCGAGTTTTCTGTATTGGTAGATAGGTCTGTAGGCGGTTCTAGCATCCAAGATGGACATGTGGAGCTAATGGTTCATAGGAGGTTACTTGTTGACGATTCTAGAGGTGTTGCAGAGGCCCTAAATGAAACAGTTTGCGTATCTGATAAGTGCGCAGGGTTAACAGTTTTAGGAAAGTACTATTTCAGAATTGATCCTGTTGGAGAGGGTGCTAGATGGCGTCGAACATTTGGTCAAGAAATATACTCACCGTTGCTTTTAGCCTTCACAGAGAGCGAAGGTAACTGGGGAGATTATCATGTCACAACATTCTCGGGAATAGATTCGTCATATAACTTACCGGAAAATGTTGCAATAATAACTCTCCAGGATCTTGGTAACGGAGAAGTTCTTCTTCGGCTAGCGCACTTATTTGAGATTGGCGAGGATGTGAATCTTTCGGTTAAGTCAAGCGTAGAACTCAAAAAAGTGTTCGGCAATAAACAGATAAACAAAGTAACTGAGGCGAGTTTATCAGCAAACCAAGGAAGAGCAGAAATGGAGAAGAAGAGATTAGTGTGGCAAGTTAAAGGATCATCTCTCGAACCGAAGGTGTCAAGGGGAGGGCCAGTCGATCCAGAAAAGCTAATAGTAGAACTTTCTCCAATGGAAATAAGAACCTTTATCATCAATTTTAAGCACTAA 3054 0.4116 MDTSVTVLWFLLLFFSLSIHSSESKFIRYNTNATIVPGKLNVHLVPHTHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALLADKNRKFIYVEQAFFQRWWREQSEYVQQTVKQLVNSGQLEFINGGMCMHDEAATHYIDMIDQTTLGHRFIKDVHASDEFGITPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFGRIDYQDRAKRKGEKSLEVVWQGSKSFGSSAQIFSGAFPENYEPPTSNFYFEVNSESPIVQDDIDLFDYNVADRVNDFVAAAISQANITRTNHIMWTMGTDFKYQYAQTWFRQLDKFIHYVNQDGRVHALYSTPSIYTDAKHAANEAWPIKTDDFFPYADRVNGYWTGYFTSRPGLKGYVRFLSGYYLAARQLEYFKGKSASSPNTDSLADALAIAQHHDAVSGTEKQHVANDYAKRLSIGYTEAEKAVAASLSFLAEAANKTDGRTPQIKFQQCPLLNISYCPASEAGFSDGKDLVVVVYNPLGRKREDVIRIPVANENVVVRDSSGKEIQSQLLPIPDAFLGLRNYYAKAYLGVSQSVSPKYWLAFSAIVPPLGFSTYYVSKAKQAATISDSNKYKSGSHSDTFEVGLGNLKLIYSAKEAKLTQYINTKRKVKESIDQTYKFYASYGDDFTDTAQASGAYIFRPNGSSIPINSNKKSPLTVLRGPIVHEVHQKINSWIYQTTRLFKGKEHAEVEFIVGPIPIDNGVGKEIATEIKTNLESSKTFYTDSNGRDFIERVRDYRKDWNLEVNQPVAGNYYPINLGIYLKDKQSEFSVLVDRSVGGSSIQDGHVELMVHRRLLVDDSRGVAEALNETVCVSDKCAGLTVLGKYYFRIDPVGEGARWRRTFGQEIYSPLLLAFTESEGNWGDYHVTTFSGIDSSYNLPENVAIITLQDLGNGEVLLRLAHLFEIGEDVNLSVKSSVELKKVFGNKQINKVTEASLSANQGRAEMEKKRLVWQVKGSSLEPKVSRGGPVDPEKLIVELSPMEIRTFIINFKH 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02249 1017 FunFam Alpha-mannosidase 40 326 - -
Vivi3g02249 1017 Pfam Alpha mannosidase middle domain 364 454 IPR015341 GO:0004559|GO:0006013
Vivi3g02249 1017 FunFam Alpha-mannosidase 406 461 - -
Vivi3g02249 1017 FunFam Alpha-mannosidase 325 405 - -
Vivi3g02249 1017 SUPERFAMILY Glycoside hydrolase/deacetylase 29 359 IPR011330 GO:0005975
Vivi3g02249 1017 CDD GH38N_AMII_LAM_like 40 322 - -
Vivi3g02249 1017 Pfam Glycosyl hydrolases family 38 N-terminal domain 41 358 IPR000602 GO:0004559|GO:0006013
Vivi3g02249 1017 Gene3D Glycoside hydrolase 38, N terminal domain 40 326 IPR027291 -
Vivi3g02249 1017 Gene3D Glycoside hydrolase family 38, central domain 327 405 IPR037094 GO:0004559|GO:0006013
Vivi3g02249 1017 Pfam Glycosyl hydrolases family 38 C-terminal domain 610 825 IPR011682 GO:0004559|GO:0006013
Vivi3g02249 1017 FunFam Alpha-mannosidase 606 873 - -
Vivi3g02249 1017 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 906 1012 IPR041147 -
Vivi3g02249 1017 Gene3D - 891 1017 - -
Vivi3g02249 1017 SUPERFAMILY Galactose mutarotase-like 468 1015 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vivi3g02249 1017 Gene3D - 605 873 - -
Vivi3g02249 1017 PANTHER ALPHA-MANNOSIDASE 9 1017 - -
Vivi3g02249 1017 FunFam Alpha-mannosidase 483 606 - -
Vivi3g02249 1017 Gene3D Glycoside hydrolase family 38, central domain 406 461 IPR037094 GO:0004559|GO:0006013
Vivi3g02249 1017 Gene3D - 486 604 IPR013780 -
Vivi3g02249 1017 SUPERFAMILY Families 57/38 glycoside transferase middle domain 362 455 IPR028995 -
Vivi3g02249 1017 FunFam Alpha-mannosidase 892 1017 - -
Vivi3g02249 1017 SMART Alpha_mann_mid_2 363 437 IPR015341 GO:0004559|GO:0006013
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02249 Vivi-Chr3 36993167 37000196 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02249 1 929 Glycoside Hydrolase AT5G13980 67.415 0.0 1322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02249 K01191 - gmx:100798150 1709.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02249 3 36993167 37000196 Vivi3g02249 3 36993167 37000196 ECH