Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02124 ATGCTTCACCAGCCATTACTCTGCTCTTCAAGAACCGCCACTCAACCAACAACATTCCTCGCTTCGATTTTCTCCGGCACCGGCAACTATCCCGGACGCACTTCACTTGCCGGAAATTTCTCTCGCCGTGATATCCGGTTGAAGTTTAGTATGCAAGCATCTGGAAGCAAATCGAGTAATAGTGAGATAAGAGAAGGTTCAAAGCTTAGCACAACTAATGCTAATGCTTATGGTCGTGCTCAAGAAGAGGTGCATAAGGACGAAGCTTTCAAAGTGATGGAGACCAAACCATCGTGGGAAACTTCCCCAGGCCAAGCATTTCCGTTGGGTGTATCACAAGTCGACAATGGGATCAACTTTGCTATTTTTTCACGACATGCAACTGCTGTCACACTTTGTTTGGTCCTTCCTGAAAGGGAAAGCATTGACACACTGGATGGTGGTACGATAGAACTGGCTTTGGACCCTCATTTAAACAAAACAGGGGACGTTTGGCACATATGTATTGAGGATCTTCCTAGGAGCAATGTTCTGTACGGGTATCGGATAGATGGGTCTCAAGACTGGGGTAAGGGGCATCGATTTGACAGAAGCATTGTGCTTGTTGATCCTTATGCAAAACTAGTTGAAGGTCGGAGATATTTTGGGGATATTAGCTCGAAGTTGTCTAAGTTTCTGGGTACATATGATTTTGACAGCTTGCCTTTTGACTGGGGAGAGAATTATAAGCTTCCAAATATTGCCGAGAAAGATCTTGTTATATATGAGATGAATGTCCGTGCATTCACAATGGATGAATCTAGTGGATTGGATAACAACATTCGTGGAAGCTATCTTGGTGTGATTGAGAAGATCCCACATCTTCTAGAGCTTGGTATCAATGCAGTGGAGTTGCTGCCTATCTTTGAGTTTGATGAGTTGGAATTGCAGAGGCGTCCAAATCCTAGAGATCACATGATTAATACGTGGGGTTATTCAACAATAAATTTCTTTGCTCCTATGAGTCGCTATGCTAGTGCTGGCGGAGGACCAGCTAATGCCTCCCAAGAGTTCAAGCAAATGGTTAAAGCCTTACATTCTGCTAGCATAGAGGTTATTTTGGATGTTGTCTACAATCATACTAATGAGGCTGATGACCCCAATCCTTACACTACTTCATTTCGTGGCATAGATAATAAGGTTTATTACATGCTGGATGACAAAGGACAATTGCTGAACTTTTCCGGCTGTGGAAATACATTGAATTGTAACCATCCTGTGGTCATGGAGCTAATTCTTGACAGCCTAAGACATTGGGTCACTGAGTATCATGTCGATGGATTTCGATTTGATCTTGCAAGTATATTGTGTCGAGGAACTGATGGTTCGCCCCTCAATGCTCCTCCACTCATCAGGGCAATCGCTAAGGATGCAGTCTTGTCTAGATGTAAAATTATTGCAGAGCCTTGGGACTGTGGTGGTCTCTATCTTGTTGGAAGTTTTCCAAATTGGGATCGATGGGCTGAATGGAATGGAAAATATCGTGATGACGTACGGAAATTTATCAAGGGTGATTCTGGAACCAAGGGGAGCTTTGCAACTCGTGTTTCTGGATCTTCTGATCTTTACAGAGTGAACAAGCGCAGACCATACCATGGTGTTAATTTTGTTATTGCACATGATGGATTCAGTTTGCGTGACCTTGTTTCATACAACTTCAAGCACAATGAAGCTAATGGGGAAGGTGGAAATGATGGATGCAATGATAACTTTAGTTGGAATTGTGGTTTTGAAGGTGAAACTGATGATACTAGTATAAGAGCTTTGCGGTCAAGGCAAATGAAGAACTTTCATTTAGCATTAATGGTATCTCAGGGAACGCCAATGATGCTAATGGGGGATGAATATGGCCATACTCGCTATGGAAATAACAATAGTTACGGGCATGATTCTGCCATTAATTTTTTCCTGTGGGATCAGTTGGATGCAAGGAAGCGTGATCACTTCAGGTTTTTCTCCAATGCGATAAAATACCGGCATGAACATAAAATATTCAGGCATGAAAATTTTCTCAGTGAGAAAGAAATAACTTGGCATGAAGACAATTGGGACAATTATGAAAGCAAATTTCTTGCATTTACGCTTCATGACAAAAGTGGGGGAGATGTATATTTAGCTTTTAATGCTCATGACTACTTTTTGAAAGTTCTGCTGCCCGCACCCCCAACAAAGAGAAGCTGGTATCGCGTGGTGGACACTAATCTTGAATCTCCTGATGACTTGGTCCTTGATGGTGTTCCCGGCATAGGAAAAACGTACAGCATAGCTCCATACTCCTCCATTCTTCTGGAGGCAAAGTTTTGA 2343 0.4251 MLHQPLLCSSRTATQPTTFLASIFSGTGNYPGRTSLAGNFSRRDIRLKFSMQASGSKSSNSEIREGSKLSTTNANAYGRAQEEVHKDEAFKVMETKPSWETSPGQAFPLGVSQVDNGINFAIFSRHATAVTLCLVLPERESIDTLDGGTIELALDPHLNKTGDVWHICIEDLPRSNVLYGYRIDGSQDWGKGHRFDRSIVLVDPYAKLVEGRRYFGDISSKLSKFLGTYDFDSLPFDWGENYKLPNIAEKDLVIYEMNVRAFTMDESSGLDNNIRGSYLGVIEKIPHLLELGINAVELLPIFEFDELELQRRPNPRDHMINTWGYSTINFFAPMSRYASAGGGPANASQEFKQMVKALHSASIEVILDVVYNHTNEADDPNPYTTSFRGIDNKVYYMLDDKGQLLNFSGCGNTLNCNHPVVMELILDSLRHWVTEYHVDGFRFDLASILCRGTDGSPLNAPPLIRAIAKDAVLSRCKIIAEPWDCGGLYLVGSFPNWDRWAEWNGKYRDDVRKFIKGDSGTKGSFATRVSGSSDLYRVNKRRPYHGVNFVIAHDGFSLRDLVSYNFKHNEANGEGGNDGCNDNFSWNCGFEGETDDTSIRALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDSAINFFLWDQLDARKRDHFRFFSNAIKYRHEHKIFRHENFLSEKEITWHEDNWDNYESKFLAFTLHDKSGGDVYLAFNAHDYFLKVLLPAPPTKRSWYRVVDTNLESPDDLVLDGVPGIGKTYSIAPYSSILLEAKF 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02124 780 SMART aamy 256 663 IPR006047 GO:0005975
Vivi3g02124 780 SUPERFAMILY (Trans)glycosidases 235 679 IPR017853 -
Vivi3g02124 780 CDD AmyAc_Glg_debranch 236 675 - -
Vivi3g02124 780 PANTHER GLYCOGEN DEBRANCHING ENZYME 61 779 - -
Vivi3g02124 780 SUPERFAMILY Glycosyl hydrolase domain 686 779 - -
Vivi3g02124 780 SUPERFAMILY E set domains 103 240 IPR014756 -
Vivi3g02124 780 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 108 206 IPR004193 GO:0004553|GO:0005975
Vivi3g02124 780 FunFam Glycogen debranching enzyme 232 686 - -
Vivi3g02124 780 Gene3D - 687 780 IPR013780 -
Vivi3g02124 780 Gene3D Immunoglobulins 90 225 IPR013783 -
Vivi3g02124 780 Pfam Alpha amylase, catalytic domain 277 386 IPR006047 GO:0005975
Vivi3g02124 780 Gene3D Glycosidases 232 686 - -
Vivi3g02124 780 CDD E_set_GDE_Isoamylase_N 107 256 IPR044505 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02124 Vivi-Chr3 34929489 34943689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02124 47 779 Glycoside Hydrolase AT4G09020 75.068 0.0 1172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02124 K01214 - gmx:100806342 1350.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02124 3 34929489 34943689 Vivi3g02124 3 34929489 34943689 ECH