Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02100 ATGGCGACCCACTCTCTCAACACCTTCCTACAACGCAGCATCAGTTTTGTTTTGAGCGCACGAAATCTTCGGACCCAAGCAGAATCTCGCGCTTCTGCATTTTCAGACAAACCGAACCTGAAAAGCCTAATTGCTGGATTCAAATCTCCTAGTCGGAGTCCATTGCCGGTGCTTCAAAATTGGATCGACCAAGGTAACAAGCTTTCGCCCTCGGAACTCAGGTGCATCTCCAGAACCCTAATAAAATCGAAACGCTACAACCACGCATTTGAGGTATTGAAGTGGATGGAGAACCAAAAGCAATTCCGTCCAAACCCAGCTGATCATGCTATGAAAGTGGAGTTAATCATTGAAAATTATGGCCTAATGGAAGCTGAAGAATATTTTATGAGCATACGTGACTCGGCTGGAAAGAAAGCTGCCTATCTCCTACTTCTACGTGGCTATGTTAGAGACAGGGACACCAGTAAAGCTGAGAGTTTCATGGAGAAGCTCTATGAACTGGGGCTAGTGGTGAACCCTCATCCGTATAATGAGATGATGAAACTATATCTTGCTACATGTGAGTACCGGAAGGTACCCCTTGTTATCCAGCAAATGAAACGGAATAAAATACCCTGCAATGTTCTGTCCTACAACCTTTGGATGAATGCTTGTGATGAGGGAAAAGGATATGGGGTTGCAGCAGTGGAAACAGTTTTTAGAGCAATGCAAAATGATGAGAATGTTGAGGTGGGATGGAGCAGTCTTGTTACTTTAGCCAATGCTTATATGAAAGCAGGACAATCTGAGAAAGCCATTTTGGTTCTCAAAAATGCTGAAGAGAAACTATCTACCTGTGATCGTCTCGGTTATTTCTTCATCATAACATTATATGCCTCTTTGAAGCAAAAGGAGGGAGTCTTGCGGTTGTGGGAAGCCAGTAAGACAGTTAGTGGAAGAATCAGTTGTGCTAACTACATTTGCATACTAACATGCTTGGTGAAGCTTGGGGACATAGCACGAGCCGAGAGAATCTTCAAAGAATGGGAGTCTAATTGTCTGAAATATGATATCAGAGTCTCTAATGTTCTTTTAGGTGCTTATGTGCGGAATGGGTCAATTGAAGAAGCTGAAGCATTACATCTTCACACATTGCAGAAGGGTGGTTATCCAAACTACAAGACATGGGAGATTCTCATTGAAGGATATGTCAAGAGGCAAAGGATGGACGAGGCTATTATTGCCATGAAAAGAGCTTTGGCTATGGTGAAAGACTGTCATTGGAGGCCGCCACAAGGACTTGTATTAGCCATAGCTGAGTATTTGGAGAAATGTGGGAATTTTGAATATGCAAACGAGTACATCACAGATATTCGTAATCTAGGTCTTGGAAGTTTATCATTGTATAAAATATTGCTTAGAATGCACTTTTCTGCTAAAAAACCACCTCTACATATCCTTAAAATGATCAATGAAGACAAAATTGAGATGGATAGTGAGACATTTTCCATTCTTAAAGCCTTCACAGATAGGTTGAAGTGTTTGGAGGAGAAGCAGTAA 1542 0.4183 MATHSLNTFLQRSISFVLSARNLRTQAESRASAFSDKPNLKSLIAGFKSPSRSPLPVLQNWIDQGNKLSPSELRCISRTLIKSKRYNHAFEVLKWMENQKQFRPNPADHAMKVELIIENYGLMEAEEYFMSIRDSAGKKAAYLLLLRGYVRDRDTSKAESFMEKLYELGLVVNPHPYNEMMKLYLATCEYRKVPLVIQQMKRNKIPCNVLSYNLWMNACDEGKGYGVAAVETVFRAMQNDENVEVGWSSLVTLANAYMKAGQSEKAILVLKNAEEKLSTCDRLGYFFIITLYASLKQKEGVLRLWEASKTVSGRISCANYICILTCLVKLGDIARAERIFKEWESNCLKYDIRVSNVLLGAYVRNGSIEEAEALHLHTLQKGGYPNYKTWEILIEGYVKRQRMDEAIIAMKRALAMVKDCHWRPPQGLVLAIAEYLEKCGNFEYANEYITDIRNLGLGSLSLYKILLRMHFSAKKPPLHILKMINEDKIEMDSETFSILKAFTDRLKCLEEKQ 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02100 513 PANTHER OS12G0527900 PROTEIN 28 487 - -
Vivi3g02100 513 Gene3D Tetratricopeptide repeat domain 289 427 IPR011990 GO:0005515
Vivi3g02100 513 Gene3D Tetratricopeptide repeat domain 72 251 IPR011990 GO:0005515
Vivi3g02100 513 SUPERFAMILY TPR-like 250 416 IPR011990 GO:0005515
Vivi3g02100 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Vivi3g02100 513 Pfam PPR repeat 320 346 IPR002885 -
Vivi3g02100 513 Pfam PPR repeat 356 375 IPR002885 -
Vivi3g02100 513 Pfam Pentatricopeptide repeat domain 163 219 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02100 Vivi-Chr3 34572974 34577165 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02100 44 439 EF-hand Containing Proteins AT1G02150 33.249 6.34e-78 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02100 - - vvo:131660954 1028.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02100 3 34572974 34577165 Vivi3g02100 3 34572974 34577165 ECH