Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02058 ATGGTTTTCTCTGCCGCGCTTTCTTCTTCAACTTTCACTCTTCCATCTCCACTCCACCACCACTCCCTCACCTCTCTAACACCTCGATCCACCGCATTCCCTCTTCGCAAACTCATCAAAACTCGAATGGAAGTCCAAACCAATGCTAACCCCAAAGAAGCCAAACTCTGGGGTGGAAGATTCGAAGAAGGCGTCACCGACGCCGTCGAACGGTTCACCGAATCCGTCTCTTACGATAAACAGTTATACAAACACGACATTACCGGAAGCACCGCGCATGCAACCATGCTCGCCAAACAAGGTTTGATCAGTGAGAGTGATAGAGATTCTATAATCGAAGGTTTGAGAGAGATTGAAAAGAGAATTGAGAGTGGTGAGTTTAATTGGAGAGCTGATAGGGAAGATGTTCATATGAATATTGAAGCTGCGCTTACTGATTTGATCGGTGAGCCTGCCAAGAAGCTGCATACTTCAAGGAGTAGGAATGATCAGGTTGTTACTGATTTGAGACTTTGGTGTCGCGATGCTATTGATAAGATTCTTGCGAGGATGAGGGAGCTTCAGGTTTCGCTTCTTAAGCTGGCTTTGAATAATCAGGGGATTATTCTTCCAGGTTATACTCATCTGCAGCGCGCGCAGCCCGTTTTGCTTCAGCATCTTTTGATTGCTTATGTTGAAGAGATTGAACGTGATGCTGGTCGTTTGATTGATTGTAGAGCTAGGATGAATTTCAGTCCTTTAGGGGCTTGTGCACTGGCCGGTACTGGGCTTCCTATTGATCGGTTCATGACATCAGATGCATTGGGATTTACAGCTCCGATGAGGAATAGTATTGATGCAGTTTCTGATCGAGATTTTCTACTGGAGTTTCTTTCTGCTAATGCCATCACAGCAGTGCACCTTTCAGGACTTGGTGAAGAATGGGTATTGTGGGCTTCAGAGGAATTTGGATTTATCACTCCAAGCGACTCTGTATCAACGGGAAGTAGCATAATGCCTCAGAAAAAGAATCCGGATCCAATGGAACTTGTTCGCGGTAAGTCTGCCAGAGTCATAGGGGGTTTGGTCACTCTTCTAACATTGTGCAAAGGACTACCACATGCTTACAATCGCGATTTGCAGGAAGACAAAGAACCAGCGTTTGACAGTGTTAAAACTATTTTGGGGATGCTTGAAGTCTCAGCAGAATTTGCAATGAACATTACTTTCAATCGGGAAAGAATACAAAAATCTTTACCTGCCGGTTATCTTGATGCAACAACGCTTGCTGACTATCTTGTCAAGAAGGGTGTGCCGTTCAGGACATCTCATGATATAGCTGGAAAAGCAGTTGCCTTGTGTACTTCGAAGAATTTCCAATTACTGGACTTGAGCCTTGAAGAGCTGAGAAGTATAAATCCAGTCTTCGACAACGATGTGTATGAGTTTCTTGGGGTAGAAAACTCGATTAAGAAATTTGTTTCGTATGGTTCCACCGGGTCTGCATGTGTTGCCGAGCAACTTGATTATTGGATTAAAAAACTTGAAATTAAGTGA 1536 0.4408 MVFSAALSSSTFTLPSPLHHHSLTSLTPRSTAFPLRKLIKTRMEVQTNANPKEAKLWGGRFEEGVTDAVERFTESVSYDKQLYKHDITGSTAHATMLAKQGLISESDRDSIIEGLREIEKRIESGEFNWRADREDVHMNIEAALTDLIGEPAKKLHTSRSRNDQVVTDLRLWCRDAIDKILARMRELQVSLLKLALNNQGIILPGYTHLQRAQPVLLQHLLIAYVEEIERDAGRLIDCRARMNFSPLGACALAGTGLPIDRFMTSDALGFTAPMRNSIDAVSDRDFLLEFLSANAITAVHLSGLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGGLVTLLTLCKGLPHAYNRDLQEDKEPAFDSVKTILGMLEVSAEFAMNITFNRERIQKSLPAGYLDATTLADYLVKKGVPFRTSHDIAGKAVALCTSKNFQLLDLSLEELRSINPVFDNDVYEFLGVENSIKKFVSYGSTGSACVAEQLDYWIKKLEIK 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02058 511 CDD Argininosuccinate_lyase 75 508 IPR009049 GO:0004056|GO:0042450
Vivi3g02058 511 Hamap Argininosuccinate lyase [argH]. 55 506 IPR009049 GO:0004056|GO:0042450
Vivi3g02058 511 Gene3D - 413 485 - -
Vivi3g02058 511 PRINTS Argininosuccinate lyase family signature 363 382 - -
Vivi3g02058 511 PRINTS Argininosuccinate lyase family signature 246 262 - -
Vivi3g02058 511 PRINTS Argininosuccinate lyase family signature 195 215 - -
Vivi3g02058 511 PRINTS Argininosuccinate lyase family signature 154 176 - -
Vivi3g02058 511 PRINTS Argininosuccinate lyase family signature 328 344 - -
Vivi3g02058 511 PRINTS Argininosuccinate lyase family signature 284 308 - -
Vivi3g02058 511 SUPERFAMILY L-aspartase-like 56 508 IPR008948 GO:0003824
Vivi3g02058 511 PANTHER ARGININOSUCCINATE LYASE 25 510 IPR009049 GO:0004056|GO:0042450
Vivi3g02058 511 Gene3D Fumarase/aspartase (Central domain) 172 501 - -
Vivi3g02058 511 FunFam Argininosuccinate lyase chloroplastic 282 439 - -
Vivi3g02058 511 Gene3D - 75 282 IPR024083 -
Vivi3g02058 511 FunFam Argininosuccinate lyase 54 159 - -
Vivi3g02058 511 Pfam Lyase 59 353 IPR022761 -
Vivi3g02058 511 ProSitePatterns Fumarate lyases signature. 328 337 IPR020557 GO:0003824
Vivi3g02058 511 Pfam Argininosuccinate lyase C-terminal 416 483 IPR029419 -
Vivi3g02058 511 PRINTS Fumarate lyase superfamily signature 284 311 IPR000362 -
Vivi3g02058 511 PRINTS Fumarate lyase superfamily signature 200 218 IPR000362 -
Vivi3g02058 511 PRINTS Fumarate lyase superfamily signature 155 173 IPR000362 -
Vivi3g02058 511 PRINTS Fumarate lyase superfamily signature 328 344 IPR000362 -
Vivi3g02058 511 FunFam Argininosuccinate lyase 414 485 - -
Vivi3g02058 511 NCBIfam argininosuccinate lyase 56 503 IPR009049 GO:0004056|GO:0042450
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02058 Vivi-Chr3 33933144 33936086 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02058 K01755 - gmx:100796544 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02058 3 33933144 33936086 Vivi3g02058 3 33933144 33936086 ECH