Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02029 ATGCAAAACCAGTTTATAAACAACCTTAAATCAACAACCATGAACCTTAAATTGGTCATTACCTTAACAATTTGCTATGTAATTTACATATGCAAGAGCAATGCTATTGATCCATGTGCATCTCAACCAGATAACTCCGACCTCAACGTGATTCCCATGTATGGAAAATGCTCACCATTCAACCCACCAAAAACTGATTCATGGGACAACAGAATCATAAACATGGCCTCCAAAGACCCGGCCCGAATGAGCTACTTATCCACATTAGTAGCCCAAAAAACCGCCTCTTCCACTCCAATTGCTTCAGGCCAGGCTTTTAACATCGGCAACTATGTTGTCCGTGTCAAAATCGGGACACCGGGTCAACTTCTCTTCATGGTCCTTGACACAAGTACCGACGAGGCTTTTGTCCCTTCCTCCGGCTGCACAGGTTGTTCCGCTTCCGCCTCAACTTTCTCCCCGAACTCTTCCACTAGTTATGTCCCATTGGATTGTTCGGTGCCACAGTGCGGTCAGGTCCGTGGGCTTTCATGCCCGGCCACAAGCTCCGGCGCGTGTTTATTCAACCAATCTTATGCAGGTTCTTCTTTCTCTGCCACACTCGTTCAAGATTCTCTTAGATTAGCTAAGGATGTTATCAGTAACTACTCTTTTGGAAGCATTAACGCTATCTCTGGTGCTTCGATTCCGGCCCAAGGGCTTTTGGGCTTGGGCCGTGGCCCGTTATCTTTATTGTCTCAATCCGGATCAATTTACTCAGGTGTTTTCTCTTACTGTCTTCCAAGTTTTAAATCTAGCTATTTTTCCGGTTCACTTAAACTCGGGCCCGTGGGCCAACCCAAAAGCATCCGAACCACACCACTTCTTCGCAATCCTCACCGTCCATCTCTCTACTATGTCAATTTCACCGGAATCAGTGTGGGTCGAGTAAATGTTCCTTTACCTAACGAACATTTATCCTTCGACCCAAACACCGGTTCCGGGACCATAATTGACTCGGGCACCGTCATAACCCGATTTGTAGAACCAATTTACAATGCAGTTAGAGATGAATTTAGAAAACAAGTGACAGGACCATTTTCAAACTTAGGAGCATTCGACACATGTTTCGTGAAGACCTATGAAACATTAGCACCAGCTGTTACGTTGCATTTCACGGGCTTGGACCTGAAATTACCAATGGAGAATAGTTTGATTCATAGCAGCTCAGGTTCGTTGGCTTGTCTTGCAATGGCAGCTGCACCGAGTAATGTGAACTCTGTGTTGAACGTGATTGCTAATTTTCAACAACAGAATTTGAGGGTTTTGTTTGATACCGTGAATAGTAAGGTTGGTATTGCCCGTGAGGTTTGTAACTAG 1359 0.4496 MQNQFINNLKSTTMNLKLVITLTICYVIYICKSNAIDPCASQPDNSDLNVIPMYGKCSPFNPPKTDSWDNRIINMASKDPARMSYLSTLVAQKTASSTPIASGQAFNIGNYVVRVKIGTPGQLLFMVLDTSTDEAFVPSSGCTGCSASASTFSPNSSTSYVPLDCSVPQCGQVRGLSCPATSSGACLFNQSYAGSSFSATLVQDSLRLAKDVISNYSFGSINAISGASIPAQGLLGLGRGPLSLLSQSGSIYSGVFSYCLPSFKSSYFSGSLKLGPVGQPKSIRTTPLLRNPHRPSLYYVNFTGISVGRVNVPLPNEHLSFDPNTGSGTIIDSGTVITRFVEPIYNAVRDEFRKQVTGPFSNLGAFDTCFVKTYETLAPAVTLHFTGLDLKLPMENSLIHSSSGSLACLAMAAAPSNVNSVLNVIANFQQQNLRVLFDTVNSKVGIAREVCN 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02029 452 Pfam Xylanase inhibitor N-terminal 111 275 IPR032861 -
Vivi3g02029 452 FunFam aspartyl protease AED3 90 275 - -
Vivi3g02029 452 Gene3D Acid Proteases 277 452 IPR021109 -
Vivi3g02029 452 PANTHER ASPARTYL PROTEASES 37 445 IPR001461 GO:0004190|GO:0006508
Vivi3g02029 452 ProSiteProfiles Peptidase family A1 domain profile. 111 447 IPR033121 -
Vivi3g02029 452 Gene3D Acid Proteases 86 275 IPR021109 -
Vivi3g02029 452 SUPERFAMILY Acid proteases 104 451 IPR021109 -
Vivi3g02029 452 FunFam Aspartyl protease AED3 276 452 - -
Vivi3g02029 452 Pfam Xylanase inhibitor C-terminal 298 447 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02029 Vivi-Chr3 33602934 33604569 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02029 101 452 Miscellaneous Gene Families AT1G77480 26.735 4.09e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02029 - - gmx:100816307 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02029 3 33602934 33604569 Vivi3g02029 3 33602934 33604569 ECH