Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02020 ATGAAAACCTCAGCAATTCACTGCTGCAGGCACAGACAACATAGCTCCGTGACTTCATCCTCTTTGCTACCATGGATATCTCCTCTTATCTTTACAAAACCTGCAGAACCTAAACTAGACCCACCTCCTGAAATCAGTGTCTCCGAAACGAGGAAGAAGAGCAAATACATCACTCATGATGTTGCTATCAATTTGATCAAACGAGAGAAAGATCCGCAACATGCATTGAAAATATTTAACATGATATCCGAACAAAAGGGTTTTAATCACAACAATGCTACCTATGCGTCCATTCTTCAAAAGCTTGCGCAGTTTAAGAAGTTTCAAGCTGTTGAACGGCTTCTGCATCAGATGAGTTATGAAACTTGTAAATTTCATGAGGGTATATTTATCAACCTTATGAAGCATTACTCAAAGTGTTCTTTTCATGAAAAAGTGCTTGATACTTTTTTTGCTATTCAGACAATTGTTCGTGAAAAGCCATCTCCCAAAGCTATTAGTTCTTGTCTTAATCTCTTGGTTGATTCGAACCGGATTGATTTGGCGCGGCAGTTACTTTTGCATGCTAAGAGGAGTTTAATTTATAAGCCAAATGTCTGCATTTTTAATATCTTGGTGAAGTACCATTGCAAAAAAGGGGATCTTGAATCTGCTTTTGAAGTTGTTAAAGAAATGAGGAACTCCCAGTATTCTTATCCTAACGTTATTACCTACTCAACCCTGATGGATGGTCTCTGTCGAAACGGAAGACTCAAAGAAGCTTTTGATCTTTTTGAGGAAATGCTTTCGAAGGATCAGATTGTGCCTGATCCCCTCACTTACAATGTTTTGATTAATGGGTTTTGCCGCAGAGGGAAACCTGATCGCGCTAGAAATGTTATTGAATTTATGAAAAATAATGGATGCTGTCCTAATGTATTCAATTACTCAGCCCTAGTAGATGGATTATGTAAAGCAGGGAAACCGCAAGAAGCAAAAGGGGTTTTGGCTGAGATGAAGAACTCTGGTTTGAAACCTGATACGGTTACCTACACTTCTTTGATCAATTTCTTCTGTAGGAATGGGAAAATTGACGAGGCTATAGAGTTGCTTAAAGAAATGAAGGAAAATGAATGCGATGCTGATACTGTTACATTCAATGTGATACTTGGAGGCTTGTGCAGAGAAGGTAGATTTGACGAGGCTTTGGATATGATTGAGAAACTTCCACACCAAGGTGTCTATTTGAACAAAGGTAGTTACAGGATTGTACTAAACTCCTTAACTCAAAATTGTGAGTTGAGGAAGGCAAATAAATTATTAGGGTTAATGCTAAGTAGAGGGTTTGTACCCCATTATGCTACCTCGAATGAATTATTGGTTCGTCTTTGTAAGGACGGGATGGCTGACGATGCTGCTACTGCTCTATTTGACTTGGTGGATATGGGGTTCCAGCCACAACTTGATTCTTGGGAACTTTTAATTGAATTAATCTGCAGAGACAGAAAGTTATTGTATGTTTTTGAGCTAATTGATGAACTGGTAACACCAACAAATTCTTGA 1542 0.3852 MKTSAIHCCRHRQHSSVTSSSLLPWISPLIFTKPAEPKLDPPPEISVSETRKKSKYITHDVAINLIKREKDPQHALKIFNMISEQKGFNHNNATYASILQKLAQFKKFQAVERLLHQMSYETCKFHEGIFINLMKHYSKCSFHEKVLDTFFAIQTIVREKPSPKAISSCLNLLVDSNRIDLARQLLLHAKRSLIYKPNVCIFNILVKYHCKKGDLESAFEVVKEMRNSQYSYPNVITYSTLMDGLCRNGRLKEAFDLFEEMLSKDQIVPDPLTYNVLINGFCRRGKPDRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKPQEAKGVLAEMKNSGLKPDTVTYTSLINFFCRNGKIDEAIELLKEMKENECDADTVTFNVILGGLCREGRFDEALDMIEKLPHQGVYLNKGSYRIVLNSLTQNCELRKANKLLGLMLSRGFVPHYATSNELLVRLCKDGMADDAATALFDLVDMGFQPQLDSWELLIELICRDRKLLYVFELIDELVTPTNS 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02020 513 Gene3D Tetratricopeptide repeat domain 44 154 IPR011990 GO:0005515
Vivi3g02020 513 Gene3D Tetratricopeptide repeat domain 155 283 IPR011990 GO:0005515
Vivi3g02020 513 Gene3D Tetratricopeptide repeat domain 284 390 IPR011990 GO:0005515
Vivi3g02020 513 Pfam PPR repeat family 339 388 IPR002885 -
Vivi3g02020 513 Pfam PPR repeat family 233 283 IPR002885 -
Vivi3g02020 513 Pfam PPR repeat 196 226 IPR002885 -
Vivi3g02020 513 Pfam PPR repeat 300 333 IPR002885 -
Vivi3g02020 513 SUPERFAMILY HCP-like 210 405 - -
Vivi3g02020 513 Gene3D Tetratricopeptide repeat domain 399 512 IPR011990 GO:0005515
Vivi3g02020 513 NCBIfam pentatricopeptide repeat 273 306 IPR002885 -
Vivi3g02020 513 NCBIfam pentatricopeptide repeat 236 270 IPR002885 -
Vivi3g02020 513 NCBIfam pentatricopeptide repeat 201 229 IPR002885 -
Vivi3g02020 513 NCBIfam pentatricopeptide repeat 413 444 IPR002885 -
Vivi3g02020 513 NCBIfam pentatricopeptide repeat 342 375 IPR002885 -
Vivi3g02020 513 NCBIfam pentatricopeptide repeat 377 410 IPR002885 -
Vivi3g02020 513 NCBIfam pentatricopeptide repeat 309 341 IPR002885 -
Vivi3g02020 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Vivi3g02020 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Vivi3g02020 513 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 161 497 - -
Vivi3g02020 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Vivi3g02020 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Vivi3g02020 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Vivi3g02020 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Vivi3g02020 513 Pfam PPR repeat 413 442 IPR002885 -
Vivi3g02020 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02020 130 508 Glycosyltransferase AT1G05670 27.273 2.58e-40 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02020 - - gmx:100790966 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02020 3 33540851 33543606 Vivi3g02020 3 33540851 33543606 ECH