Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01970 ATGAGGCCATCCCTGATGTATATTTTGAGTTTGGGGCATCTGTACCTGCAGCAGACTTGGCTGTTCATGTTCTTGACTATCTTCATAAGAAGCTTGAGGAAATGTGTCTTGTACAAGGAGGAAGCTTATCTCATGGTGCTTTACATGTATGTGGGAAGCTTGTTGCCATATATTGAGGGTCTTGATTCCTGGCTTTTTGACGGAATACTGGATGATCCTTCTGATGAGATGTTCTTTTTTGCTAATAAAGAAGTCTCAGTTGCTGAGGCTGAGTTTTGGGAGAAGAGTTATCTAATAAAAAAGCTACAACATGGTAAGTTAGATACTGAGTTGTCTTCTACAAATTATGCTGGCGATTCCATATCAGCATCAAATGCGAAGAAAGAAACGGGCATGAGGGATTCCATCTCTTTGTCTAGTACAAATAAAGGAAAAGGGCAGAGCATTAGAGGCTGTCCAGCTTGTCCTTTGTTTATTAAGGAATTAGCTAAGTCAATTGTTTCTGCTGGAAAGTCTTTGCAGCTGATGCGCCATGTTCCGAATTCCTTAGCAGTATGTAGCAAAGGAAGTAGTTGTAAATTTGGAAGTACCAAATCATCAAACTATGGTTTGTCTTCTACTCATAGAGTGGCTGGGCTAACGCTGTCCGAAATTTTTTCTGTATCACTAGCTGGACTTATTGGCCATGGTGACCATGTTTGTAAATACTTTTGGCAAGATGATTGGCACGAATCTGTTTCTGTTTCCTCCTTTGTATCTTATTTAAATTTAAATGCGGAAAAATCAGACAGTGAAAACTTAACTGCTCCACCATACTCGGAGAAGATTTGGTATAAGTTTTTGATTGATACATTATTTCAAAAAGGATCAGCTGATTTGAAACCAAAATATGAAGACAGAAATAATGGCAAAAGAGATTCAGCAGGGGATAGAGTTGTTAAAGACGAGTTGTTTCTCTTGAGATCATGCTTACAAAATCCAGTAGTTACCGTTTGTCGAAAAGCAATTGGAAACAATGGGGATGCCTTGAAAACTTTGAATTTATCTCGAAAATTCTGCTTGCCTTCTTTAAACGATGAGGGTTTAAGAAAGGCTATATTTGGTGGTGAAAGCACATCGTTTTCTGATAGTGAAGGAACAAACTATACTTTTGGTTTTCAGTTTGATCAATCCAAACACACTCACTCACAAGATAAGAGAAACCTGTTAGAAACGCTGTTTCCTTTTCCCACCATATTGCCTTCAGTTCAGGATGATCTTTCCGTGTCAGAGCTCTTGCCTTTCCAGAGAAACAGCACTCTTCCTTCAAGAGTTCTTCACTGGGTGCAAAATGCGGACCTAAGAACAACTCCACTACCTCTGGTTATTATGCAGTACTGTCTAACTGCCTACATTCAGAAACAGGTAGATTATATTGGAGTAAATATGTTGTTAAAGTTGATGAATGAATGGAGGTTGATGGACGAGCTTGCAGTGCTGCGAGCTATATACTTGTTAGGTTCAGGTGATTTGCTACAACACTTTTCAACTGTAATTTTTGATAAGTTAGATAAACGTGAAACATGGGATGATGACTTTGAATTAAACACAATATTACAGGAATCAATCAGAAATTCTGCTGATTGTATGCTGTTAAGTGCTCCCGATTCATTGGTGGTGTCTATAACCAAAAATATTGTTGAGAGTGATGAGGAAGCTAGCATACCTGGTTCTGTTATGGGTACTCCTCGTAAAAGTCATGTCAATAACTTCGGGATTAACGGCCTTGATATGCTAAAGTTCACATATAAGGTACCTTGGCCTCTTGAACTCATTGCAAACACAGAGGCAATAAAGAAGTACAACCAGGTTATGCGGTTTTTGCTGAAGGTCAAGCGTGCAAAATGTGTTTTAGATAAAGTGCGGAGATGGATGTGGAAGGGTAGGGGATCTACAACAAATAACAGAAAACGTCATTGGCTAGTGGAGCAGAAACTCCTTCATTTTGTGGATGCTTTTCACCAATATGTGATGGACCGGGTATATCACAGTGCATGGCGTGAACTATGTGAAGGTATGACTGTGGCGAAATCTCTGGATGAGGTCATTGATGCCCATGAGGCCTACATTTTGTCAATTCAGCGGCAGTGCTTTGTGGTTCCTGATAAACTGGGGGCTTTGATTGCCAGTCGCGTTAATATCATTCTTGGTTTAGCTTTAGACTTCTATACCATACAACAGACATTAAAAAGCGGCGGAACTGTTTCTGCAATCAAGGCAAGGTGTGAGATGGAGGTCGACCGAATAGAGAAACAGTTTGATGATTGCATTGCTTTCCTACTTAGGGTTTTATCTTTCAAACTAAATGTAGGACATTTCCCTCATTTGGCTGATTTGGTCACCAGAATTAACTACAACTATTTCTATATGTCTGCCAATGGGAATTTAATGACCACTTCTGGCCCTGGAAGTATTACTTCAAGATTGGGGAAAGTCACTGGGTAA 2484 0.3965 MRPSLMYILSLGHLYLQQTWLFMFLTIFIRSLRKCVLYKEEAYLMVLYMYVGSLLPYIEGLDSWLFDGILDDPSDEMFFFANKEVSVAEAEFWEKSYLIKKLQHGKLDTELSSTNYAGDSISASNAKKETGMRDSISLSSTNKGKGQSIRGCPACPLFIKELAKSIVSAGKSLQLMRHVPNSLAVCSKGSSCKFGSTKSSNYGLSSTHRVAGLTLSEIFSVSLAGLIGHGDHVCKYFWQDDWHESVSVSSFVSYLNLNAEKSDSENLTAPPYSEKIWYKFLIDTLFQKGSADLKPKYEDRNNGKRDSAGDRVVKDELFLLRSCLQNPVVTVCRKAIGNNGDALKTLNLSRKFCLPSLNDEGLRKAIFGGESTSFSDSEGTNYTFGFQFDQSKHTHSQDKRNLLETLFPFPTILPSVQDDLSVSELLPFQRNSTLPSRVLHWVQNADLRTTPLPLVIMQYCLTAYIQKQVDYIGVNMLLKLMNEWRLMDELAVLRAIYLLGSGDLLQHFSTVIFDKLDKRETWDDDFELNTILQESIRNSADCMLLSAPDSLVVSITKNIVESDEEASIPGSVMGTPRKSHVNNFGINGLDMLKFTYKVPWPLELIANTEAIKKYNQVMRFLLKVKRAKCVLDKVRRWMWKGRGSTTNNRKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMTVAKSLDEVIDAHEAYILSIQRQCFVVPDKLGALIASRVNIILGLALDFYTIQQTLKSGGTVSAIKARCEMEVDRIEKQFDDCIAFLLRVLSFKLNVGHFPHLADLVTRINYNYFYMSANGNLMTTSGPGSITSRLGKVTG 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01970 827 FunFam Gamma-tubulin complex component 486 801 - -
Vivi3g01970 827 Pfam Gamma tubulin complex component N-terminal 49 202 IPR041470 -
Vivi3g01970 827 Pfam Gamma tubulin complex component C-terminal 486 802 IPR040457 GO:0043015
Vivi3g01970 827 Gene3D - 486 801 IPR042241 -
Vivi3g01970 827 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 40 802 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01970 Vivi-Chr3 32512703 32521803 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01970 41 533 Glycosyltransferase AT1G20570 47.244 9.50e-137 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01970 K16572 - gmx:100782299 1272.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01970 3 32512703 32521803 Vivi3g01970 3 32512703 32521803 ECH