Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01924 ATGGGTGGCGCTCACAGTCGCGACGAACTTCTCGACAGTTCCGACTCAGAATACGAAGAAGAAAGTGAAAACGAAGCAAGTTACGAAGACGCAAACGAAGGAAGTTCAGAGGGAAGAGTCAAAACTCCTTCATCAATCGATGATGTTGATGCCAAACTCAAAGCCCTTAAGCTCAAATACTCTTCTAAAAACCCTAACCCTAACAATGTTAAGCTTTATCTCCACAACTCTGTTGACTCCAAATGGGAGATTTACGAGAAATTAACCACTTACTCGTTTGTTAAAACTTGTAGTGTTGAGGGAGAGAGTGATGACGATGAGGAAGATGAGGATGGTGAAAAGGGTTTCTGGGTTTTGAAAGTTGGGTCTAAAATTAGGTCAAAAGTTGGGGCGGAAATGCAGTTGAAAACGCTGGTTGATCAGCGGAGAGTGGATTTTATTGCGAAGGGTGTTTGGGCTATGAGGTTTTTTACGGAGCAGCATTATGAGGCTTTTTTGGTTCAGTTTCAGAATTGTACGTTTGAGAATATGTATGGGTTTGAAGCGATTGATGAGAACAAGCTTAAGGTTTATGGGAAGGATTTTATTGGGTGGGCGAATCCTGAAGCGGCGGATGATTCTATGTGGGAGGATGCGGATGATAGTTTCTCAAAGAGTCCGGCTTCTGCCACCCCGGTGAGAGCGAGTCAGGATTTGACGGAGGAATTTGAGGAGGCGGCAAACGGTGGGATTCAGAGCTTGGCGCTTGGGGCTCTGGATAACAGTTTCCTGGTTGGCGAAAATGGGATTCAGGTGGTGAAGAATTTCGCACATGGTATACAAGGAAAAGGTGCTTTTGTGAACTTTGGTGGTGGTTCAGCTTCAGCTTCGAAGTTTGTGCAATCTACTCCGAAGAAAACACTTCTCATGAAAGCTGAAACCAGCATGCTTCTGATGAGTCCGTTGAATGAAAGTAAGCTTCGTTCAACCGGGCTTCATCAGTTTGACATTGAGACGGGGAAGGTTGTGACGGAATGGAAATTTGGTAAGGATGGTACTGAGATTACAATGAGAGATATCACGAATGATAGTAAAAGTTCTCAGTTAGATCCTTCTGGTTCTACTTTTCTTGGATTGGATGATAATAGGCTTTGTAGGTGGGATATGCGTGACCGTCATGGAATAGTTCAGGATCTTGCTGGTTCTAACTCTAATATGAGAACACCTGTGTTGAATTGGGATCAAGGTCATCAATTCTCCAGGGGGACCAACTTTCAATGCTTTGCTACAACTGGTGATGGTTCTGTTGTTGTTGGCTCACTTGATGGGAAGATTAGGCTCTATTCAATTAACTCTATGAGGCAGGCGAAAACTGCATTTCCTGGACTTGGCTCGCCGGTTACTCATGTGGATGTTACATTTGATGGAAAGTGGATTGTGGGAACAACAGATACTTACTTGGTTGTTATTTGTACTCTCTTTACTGATAAAGATGGAAACAGTAAAACTGGTTTTGCTGGAAGAATGGGAAATAGGATTGCTGCTCCAAGGTTGCTCAAGCTCAACCCTCTTGATTCACATTTAGCTGGAGTCAACAATAAATTCCACAGTGCTCAGTTTTCATGGGTGACAGAAAATGGGAGGCAGGAGCGACACATAGTAGCTACAGTGGGGAAGTTTAGTGTGATATGGAACTTCCAACAGGTCAAGGACGGTTCTCATGAGTGCTACCGCAGCCAACAGGGTCTAAAGAGCTGCTACTGCTACAAGATAGTCCTCAGGGATGATTCCATTGTTGAGAGCCGATTCATGCACGACAAGTTTGCAGTCACTGATTCTCCTGAAGCTCCCTTGGTTATAGCCACACCAATGAAAGTTAGTTCATTCAGCTTATCCAACAGGCGACAATAA 1890 0.4402 MGGAHSRDELLDSSDSEYEEESENEASYEDANEGSSEGRVKTPSSIDDVDAKLKALKLKYSSKNPNPNNVKLYLHNSVDSKWEIYEKLTTYSFVKTCSVEGESDDDEEDEDGEKGFWVLKVGSKIRSKVGAEMQLKTLVDQRRVDFIAKGVWAMRFFTEQHYEAFLVQFQNCTFENMYGFEAIDENKLKVYGKDFIGWANPEAADDSMWEDADDSFSKSPASATPVRASQDLTEEFEEAANGGIQSLALGALDNSFLVGENGIQVVKNFAHGIQGKGAFVNFGGGSASASKFVQSTPKKTLLMKAETSMLLMSPLNESKLRSTGLHQFDIETGKVVTEWKFGKDGTEITMRDITNDSKSSQLDPSGSTFLGLDDNRLCRWDMRDRHGIVQDLAGSNSNMRTPVLNWDQGHQFSRGTNFQCFATTGDGSVVVGSLDGKIRLYSINSMRQAKTAFPGLGSPVTHVDVTFDGKWIVGTTDTYLVVICTLFTDKDGNSKTGFAGRMGNRIAAPRLLKLNPLDSHLAGVNNKFHSAQFSWVTENGRQERHIVATVGKFSVIWNFQQVKDGSHECYRSQQGLKSCYCYKIVLRDDSIVESRFMHDKFAVTDSPEAPLVIATPMKVSSFSLSNRRQ 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01924 629 FunFam Vacuolar import/degradation Vid27-related protein 307 600 - -
Vivi3g01924 629 Pfam VID27 C-terminal WD40-like domain 253 571 IPR013863 -
Vivi3g01924 629 PANTHER VACUOLAR IMPORT AND DEGRADATION PROTEIN 27 1 627 IPR040458 -
Vivi3g01924 629 SUPERFAMILY Putative isomerase YbhE 322 526 - -
Vivi3g01924 629 MobiDBLite consensus disorder prediction 13 30 - -
Vivi3g01924 629 Gene3D - 308 575 IPR015943 GO:0005515
Vivi3g01924 629 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01924 Vivi-Chr3 31617857 31621018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01924 48 628 Acyl Lipid Metabolism Gene Families AT3G19240 65.882 0.0 789
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01924 - - cave:132185778 940.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01924 3 31617857 31621018 Vivi3g01924 3 31617857 31621018 ECH