Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01772 ATGTCTTCATGGCTGGCTCGTTCTCTCGCAAACTCTCTCCGACTCGACGATGACGGTAACATTGAAAACGACGTCGTAACCAACCCTCCAACCACCTCCCCCAGAATTTCCCCTCAACAAAATCAATCGCAAGATAATGCAATTATTGAATCACAATTACAACATCACGATGATGAAAATGATGATGAAACGCAAGGTCGCGGTGGCGTTAAAGAAGACCTCGACGAAATCAAACAAACCCTAACTCGTCAATTTTGGGGAATGGCTTCGTTTCTCGCTCCTCCCCCAACTGCTTCTCAATCCGATCACTCTGACAATCCTCAACAACAACAACCACAAGAAGAAGAACATCAACGACAATTTGATGAGGCTTTGATTTTAAATCAATCTTTGGAAATGGAACAAGGTGCGCTCCGTGAGGATGATCCTGACCCGAATTCGAATACATTTGGATCCGATTCGGAAGACCGGGAGCCGGAGTTTGATATCCCGTGTGCGGTTGGAATTACGGAGGAGGTGTTGACGTTCGCCTTGAATATCGCTATGCATCCTGAGACGTGGTTGGATTTTCCTATTGACGAAGAAGATGATACCGATGATTTTTACATGTCCGAAGAACAACAAGAGCATGCTTTGGTCGTTGAAAGACTTGCTCCGAGATTAGCTGCACTCAGGATTGAACTCTGTCCTTGCCATATGAGTGAAAGTTACTTCTGGAAAGTTTATTTTGTACTTTTGCATTCGAGGCTTAATAAACAAGATTCGGAGATTTTGTCTACACCCCGGGTCATGGAAGCCAGAGCGACATGGATGCAGGAATTGCACAAACAAACAAAGCCTGAATTTGAAATTTTCGGAAGAAGTGATCTCTTCTCAAGAGAAAATGTTCAGCATCATGATTCTACTCCCAGCTTATCAGATGACACCTATTCTGATGACATGCCTCACCAGACATATGGATATAGAACCGACTCTTTGTCCATGAGGGCAGATAATGAGTCTGAGAAGCACACAGTCGAAAGTTCTGGATCACATTTCTCTGATAAGTCAGTTATTGAAGAAAATCCAATTATTAAAAATGAAAACAAGGATCTGAAAAGTGGTCGACGGTCTCAAATTATCATTCAAGACTATGATGATGATGACGACGATGATTGGCCAGAGGATGATTCTGACTTAGGGGGATATGGTGGAACAACTCTACCTATTGTCAATGAAGAAGACATATCTTTCAGCGATTTAGAGAATGATGATTTTGGCATTAAACACGTTAGTGCCAATCCTGATTCAAAGGTGGTATAA 1302 0.4247 MSSWLARSLANSLRLDDDGNIENDVVTNPPTTSPRISPQQNQSQDNAIIESQLQHHDDENDDETQGRGGVKEDLDEIKQTLTRQFWGMASFLAPPPTASQSDHSDNPQQQQPQEEEHQRQFDEALILNQSLEMEQGALREDDPDPNSNTFGSDSEDREPEFDIPCAVGITEEVLTFALNIAMHPETWLDFPIDEEDDTDDFYMSEEQQEHALVVERLAPRLAALRIELCPCHMSESYFWKVYFVLLHSRLNKQDSEILSTPRVMEARATWMQELHKQTKPEFEIFGRSDLFSRENVQHHDSTPSLSDDTYSDDMPHQTYGYRTDSLSMRADNESEKHTVESSGSHFSDKSVIEENPIIKNENKDLKSGRRSQIIIQDYDDDDDDDWPEDDSDLGGYGGTTLPIVNEEDISFSDLENDDFGIKHVSANPDSKVV 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01772 433 MobiDBLite consensus disorder prediction 297 327 - -
Vivi3g01772 433 Pfam BSD domain 198 254 IPR005607 -
Vivi3g01772 433 ProSiteProfiles BSD domain profile. 198 250 IPR005607 -
Vivi3g01772 433 PANTHER BSD DOMAIN-CONTAINING PROTEIN 3 419 - -
Vivi3g01772 433 Gene3D BSD domain 166 259 IPR035925 -
Vivi3g01772 433 MobiDBLite consensus disorder prediction 94 108 - -
Vivi3g01772 433 SMART wurzfinal6 198 250 IPR005607 -
Vivi3g01772 433 MobiDBLite consensus disorder prediction 377 391 - -
Vivi3g01772 433 MobiDBLite consensus disorder prediction 51 72 - -
Vivi3g01772 433 MobiDBLite consensus disorder prediction 295 355 - -
Vivi3g01772 433 MobiDBLite consensus disorder prediction 376 401 - -
Vivi3g01772 433 MobiDBLite consensus disorder prediction 24 50 - -
Vivi3g01772 433 SUPERFAMILY BSD domain-like 168 254 IPR035925 -
Vivi3g01772 433 MobiDBLite consensus disorder prediction 13 72 - -
Vivi3g01772 433 MobiDBLite consensus disorder prediction 91 119 - -
Vivi3g01772 433 MobiDBLite consensus disorder prediction 328 343 - -
Vivi3g01772 433 MobiDBLite consensus disorder prediction 136 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01772 Vivi-Chr3 28644579 28649446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01772 165 250 EF-hand Containing Proteins AT1G69030 30.208 1.62e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01772 - - gmx:100794286 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01772 3 28644579 28649446 Vivi3g01772 3 28644579 28649446 ECH