Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01743 ATGTTGTCTAGGAAGGCTAGCGAGGATTCTCATGGGCAAGACTCTAGTTACTTTTTAGGATGGCAAGAGTATGAGAAGAATCCATATCATCCCATTCATAATCCTAGTGGAATCATTCAGATGGGACTTGCGGAAAATCAGCTTTCATTTGACGTAGTTGAATCATGGCTTGAAAGAAATTCTGATTCAATGGAGATGAAAAAAGATGGAACATCTATATTTAGAGAACTTGCTCTATTTCAGGATTATCATGGCTTACCTGCTTTCAAAAATGAATTGGTGGAGTTTATGGCGAAAATAAGAGGAAATGGAATTAAATTTGATTCCAAGAATCTTGTCCTCACAGCTGGAGCAACTTCTGCAAACGAGATTCTCATGTTTTGTCTTGCTAATAAGGGAGAAGCTTTCATTCTTCCAACACCTTATTATCCAGGGTTCGATAGAGATCTTAAATGGCGCACTGAAGTTGAAATTGTTCCAATGAATTGTTCGAGTTCAAATGATTTCAGAATCACTTCGTCTACTTTAGAACAAGCCTTTCAACAAGCGAAAAACTTGAACCTCAAGGTCAAGGGTGTACTAGTAACTAACCCTTCAAACCCACTAGGCACCACCATGACCAAAAATGAACTTAACCTTCTACTTAACTTTGCGATAGACAAAAATATCCACATAATAAGCGACGAAATCTACTCGGGTACTGTCTTCGATTCACCCAAATTCGTAAGCATCATGGAAGTTATAAATGAAAGAAGCTTACAAAATGATGAAATTTCGAAGCGTGTTCATGTTGTTTATAGTTTGTCCAAAGATTTAGGTGTACCTGGTTTTCGTGTAGGAATGATATATTCAAGTAACGAAAAGGTTGTATCTACGGCTACCAAAATGTCAAGTTTTGGACTTATTTCGTCACAAACTCAATATTTGCTAGCAAAATTACTGGGTGACAATAAATTTACTTTTGATTATATGGAAGTGAACAAAACAAGATTGAAGAAACAAAAGGAAATAATTGTTAGTGGTTTGAAAAACGCAGGAATTCAATGTTTAAAGAGCAATGCTGGATTGTTTTGTTGGGTTGATATGAAACATTTGTTGAGTTCTTCAACTTTTGAAGCGGAGAAAGAGCTTTGGAAAATAATTCTTTATCGAGTTGGTTTGAATATATCTCCCGGATCCTCTTGTCATTGTTCTGAACCGGGATGGTTTAGGATTTGTTTTGCGAATATGTCTCAAGAAACCTTAAAAGTTGCTATGAGAAGGATTAAGGTTTTTATAGATTCAACTTCAACAATGAATTCTATTAAACAATCATTTGTTAATAATGTCAATTATTACACTACTAAGAGAAGAATGACTAATCGGATTTTTCAGTTATCACTGTAA 1386 0.3521 MLSRKASEDSHGQDSSYFLGWQEYEKNPYHPIHNPSGIIQMGLAENQLSFDVVESWLERNSDSMEMKKDGTSIFRELALFQDYHGLPAFKNELVEFMAKIRGNGIKFDSKNLVLTAGATSANEILMFCLANKGEAFILPTPYYPGFDRDLKWRTEVEIVPMNCSSSNDFRITSSTLEQAFQQAKNLNLKVKGVLVTNPSNPLGTTMTKNELNLLLNFAIDKNIHIISDEIYSGTVFDSPKFVSIMEVINERSLQNDEISKRVHVVYSLSKDLGVPGFRVGMIYSSNEKVVSTATKMSSFGLISSQTQYLLAKLLGDNKFTFDYMEVNKTRLKKQKEIIVSGLKNAGIQCLKSNAGLFCWVDMKHLLSSSTFEAEKELWKIILYRVGLNISPGSSCHCSEPGWFRICFANMSQETLKVAMRRIKVFIDSTSTMNSIKQSFVNNVNYYTTKRRMTNRIFQLSL 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01743 461 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 293 316 - -
Vivi3g01743 461 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 41 67 - -
Vivi3g01743 461 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 187 211 - -
Vivi3g01743 461 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 133 154 - -
Vivi3g01743 461 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 74 90 - -
Vivi3g01743 461 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 261 285 - -
Vivi3g01743 461 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 111 131 - -
Vivi3g01743 461 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 223 246 - -
Vivi3g01743 461 Gene3D - 61 316 IPR015421 GO:0003824
Vivi3g01743 461 FunFam 1-aminocyclopropane-1-carboxylate synthase 3 61 316 - -
Vivi3g01743 461 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 3 424 - -
Vivi3g01743 461 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 267 280 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vivi3g01743 461 Gene3D Aspartate Aminotransferase, domain 1 27 421 IPR015422 GO:0003824
Vivi3g01743 461 FunFam 1-aminocyclopropane-1-carboxylate synthase 2 291 421 - -
Vivi3g01743 461 Pfam Aminotransferase class I and II 39 422 IPR004839 GO:0009058|GO:0030170
Vivi3g01743 461 CDD AAT_like 75 423 - -
Vivi3g01743 461 SUPERFAMILY PLP-dependent transferases 9 426 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01743 Vivi-Chr3 28256738 28259212 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01743 K01762 - gmx:100803507 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01743 3 28256738 28259212 Vivi3g01743 3 28256738 28259212 ECH