LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g01702	ATGGCGGAAGAACCACAATACGCCCTAAAACGCAAATACGAAGACCAACCCACCGCCACCGAGATAGACCTCGAAGTCGCAACCGCCAAACAGCGAGCTCAAGAAGTCGCCGCTCGACTCCTCAGTGTCACCGGCGGCGGCGCTCCTCCTCTCTCCTTCGATCCTAAACGCTCCAAGTCTGATAACGGTGGTCCACAATCCGGCTTCGATTCTTACGATTCGAAGCCGCAGTATTCGGCTGGTTCTTATGGTGGTGGTTCTAGTAAGAAGATTGAGATACCTAATGGGAGGGTTGGGGTTCTTATTGGAAAGGGAGGGGAGACTATTAAGTATCTTCAGATGCAGTCTGGGGCGAAGATTCAGGTTACAAGGGATATGGATGCGGATCCTAATTCTACTACTAGGATGGTGGAGCTTATGGGGACTTCTGAGGCTGTTGCTTCTGCTGAGAAACTCATCAATGAAGTCCTTGCTGAGGCTGAAGCTGGGGCTTCTGTTGGTGGTGGTACTAGACGGATGGCTGCACAATCTGGGGGTGATGAGTTTTCGATGCAAATCCCAAACAATAAGGTGGGCCTTATAATTGGTAAAGGAGGAGAGACAATTAAGAGTATGCAAGCTTCTACTGGAGCAAGGATTCAGGTGATACCTCTGCATCTTCCCCCAGGCGATCCATCAACAGAAAGAACATTAAAAATTGACGGGGCTCCTGATCAAATTGAAGCAGCAAAGCTATTGGTTAACCAAATCATCACTGGCGAGAATCGTCTCAGAGGTTCAGGGAACTCCGGCGGTTACACTCAGCAAGGTTACCAATCCCGTCCACCATCTAGCTGGGCCCCCCCTGTTGCTCCTGCTCAACAACCTGGTTATGGCTATGGGCAACCTGGATCATACTCTGGTCCAGCACAGTATAACATGCCTCAGCCTCCATACTCAGGCTATCCTCCCCAGCAACCTGGCGGGTACCCTGCCAATTGGGACCAGTCCACTGCACCACCTCACCAGCAGTCTGCAAGTGGTTATGATTATTACAATCAACAACCCCAGCAACAGCAAAATCCCGGGGGTCCTGCTCAGCCAGCTGATGGGTCTGCATACAATTACAGTCAGCCACCTTCCACTGGTTATAGCCAACCAGGACAGGGGGGTTATGGTCAGGAAAGCTATGGTGCGTATAATGCACCACAACAATCAGGGTATGGTCAGCCCCCAACATATGATCAGCAACAAGGTTATGGCTCTGCTCCCAGCTATGGCAGTGGGAGTAACCCAACACAGGAAGGGCACACTTCCAACTATGGCTCACAGGCAGATTCGTCCCAAACTTCGCAACCCTCTACTGTTGCCACGCAAGGCTATGCTACCAACCAACAAGGGACTCCTCAACCAGGTTATGGGGTAGCCCCTACCTCCCAAACGGCCTATGGGAATCAACCACAATCTGGTTATGGACCTGGTTATGGTGCCCCTCCATCTCAAAAGCCAACTGCAAATCCACCTGTGTATGGTCAATCACAGTCACCTGGCACCGCTGGAAGTTATGGTCAGTCAGCATATCCCCCTACCCAGGCCCCACCTTCTGGGTATGCTCAGCCAGAGTCAGGCACTCAGAGGCCACCAGTGCAACCAGGATACGGTTCTCAATCGTATGGTGCTCCTCAAGGTGGCCAGCCTGGCTACGGTCAGACCCCACCATCGTATGGAAACAGTTCCTATGGTGCTGGTTATACTCAGCCTCCCGTGTATGCTAGTGATGGGGCAGCTGCACAGCCTGTTCAACAGGGTGGTGTTGCTAAAGCGTCCCCCAAAAGTTGA	1818	0.5204	MAEEPQYALKRKYEDQPTATEIDLEVATAKQRAQEVAARLLSVTGGGAPPLSFDPKRSKSDNGGPQSGFDSYDSKPQYSAGSYGGGSSKKIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVTRDMDADPNSTTRMVELMGTSEAVASAEKLINEVLAEAEAGASVGGGTRRMAAQSGGDEFSMQIPNNKVGLIIGKGGETIKSMQASTGARIQVIPLHLPPGDPSTERTLKIDGAPDQIEAAKLLVNQIITGENRLRGSGNSGGYTQQGYQSRPPSSWAPPVAPAQQPGYGYGQPGSYSGPAQYNMPQPPYSGYPPQQPGGYPANWDQSTAPPHQQSASGYDYYNQQPQQQQNPGGPAQPADGSAYNYSQPPSTGYSQPGQGGYGQESYGAYNAPQQSGYGQPPTYDQQQGYGSAPSYGSGSNPTQEGHTSNYGSQADSSQTSQPSTVATQGYATNQQGTPQPGYGVAPTSQTAYGNQPQSGYGPGYGAPPSQKPTANPPVYGQSQSPGTAGSYGQSAYPPTQAPPSGYAQPESGTQRPPVQPGYGSQSYGAPQGGQPGYGQTPPSYGNSSYGAGYTQPPVYASDGAAAQPVQQGGVAKASPKS	605

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g01702	605	Gene3D	K Homology domain, type 1	81	176	IPR036612	GO:0003723
	Vivi3g01702	605	Gene3D	K Homology domain, type 1	177	275	IPR036612	GO:0003723
	Vivi3g01702	605	ProSiteProfiles	Type-1 KH domain profile.	86	153	-	-
	Vivi3g01702	605	MobiDBLite	consensus disorder prediction	59	84	-	-
	Vivi3g01702	605	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	84	163	IPR036612	GO:0003723
	Vivi3g01702	605	FunFam	KH domain-containing protein	176	275	-	-
	Vivi3g01702	605	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	182	297	IPR036612	GO:0003723
	Vivi3g01702	605	MobiDBLite	consensus disorder prediction	255	605	-	-
	Vivi3g01702	605	MobiDBLite	consensus disorder prediction	323	481	-	-
	Vivi3g01702	605	PANTHER	KH DOMAIN CONTAINING RNA BINDING PROTEIN	77	403	-	-
	Vivi3g01702	605	ProSiteProfiles	Type-1 KH domain profile.	179	247	-	-
	Vivi3g01702	605	Pfam	KH domain	183	248	IPR004088	GO:0003723
	Vivi3g01702	605	Pfam	KH domain	89	155	IPR004088	GO:0003723
	Vivi3g01702	605	MobiDBLite	consensus disorder prediction	40	89	-	-
	Vivi3g01702	605	MobiDBLite	consensus disorder prediction	255	276	-	-
	Vivi3g01702	605	SMART	kh_6	85	158	IPR004087	GO:0003676
	Vivi3g01702	605	SMART	kh_6	178	252	IPR004087	GO:0003676
	Vivi3g01702	605	CDD	KH-I	89	154	-	-
	Vivi3g01702	605	MobiDBLite	consensus disorder prediction	499	578	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g01702	Vivi-Chr3	27579103	27583211	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g01702	K13210		-	gmx:100813135	615.15

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi3g01702	3	27579103	27583211	Vivi3g01702	3	27579103	27583211	ECH