Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01675 ATGGCGGATCCCTATTACCCATACCCAACTTCCGCCCCTTCCGACGGAGCAAACTTTGCTAGAAGTAGCTATGCCGGTTACATTCCATCCGAGGCACCATCATTGGCGTCTCCTCGTCCTAAATCGACTGAATTTCCCGGTTACGGAACAGATTACCTGCATAAAGATGTAAGTTTGTTTCGGACGGAGCCATATGGTGTTGATGATACCAGGGGATCTAGAGTTCACTCCGAACCTAATGTTGCAGATTATTCTCCTCTTGAAGATCCTAAATTAAGTACGAAAAGAGATACTCTGTTGGGTGTTGATCCAGGCATTCCTGATGCAGTTGCGAACAATGAAAGATCAGTCTCTAAAAGCAGTTATGATGCCCTCCCAGTTTCAGCTGCAGAATCGAATATTTTGTTTGTGGGTGGCCTTCCTAAAGATTGTACTAGAAGGGAAGTAGGCCATCTTTTCCGTCCCTTTATTGGTTATAAGGATATCAAAGTTGTTCACAAGGAGCCAAGACGGAGTGGGGACAAGGCTATGATATTTTGTTTTGTAGAGTTTACTGAACCCAAATGTGCTCTCACCGCTATGGAAGCTCTGCAAGGCTACAAGTTTGATGATAAAAAACCTGATTCACCAACCTTAAAAATCCAGTTTGCGCACTTTCCTTTCCGTCCGCCAACAGATGATCGACATTAA 690 0.442 MADPYYPYPTSAPSDGANFARSSYAGYIPSEAPSLASPRPKSTEFPGYGTDYLHKDVSLFRTEPYGVDDTRGSRVHSEPNVADYSPLEDPKLSTKRDTLLGVDPGIPDAVANNERSVSKSSYDALPVSAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIQFAHFPFRPPTDDRH 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01675 229 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 26 221 - -
Vivi3g01675 229 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 206 IPR000504 GO:0003723
Vivi3g01675 229 SUPERFAMILY RNA-binding domain, RBD 106 206 IPR035979 GO:0003676
Vivi3g01675 229 SMART rrm1_1 134 215 IPR000504 GO:0003723
Vivi3g01675 229 CDD RRM_AtNSRA_like 132 217 - -
Vivi3g01675 229 Gene3D - 127 219 IPR012677 -
Vivi3g01675 229 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 219 IPR000504 GO:0003723
Vivi3g01675 229 MobiDBLite consensus disorder prediction 64 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01675 Vivi-Chr3 27209178 27212930 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01675 - - gmx:100809186 308.916