Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01596 ATGCGAATCAGAAAGCCTCATAACAACAAGAAGAATGTCGCCGCCGCTGCCGCTGCCGCCGCCGGCAAAGGAGAAAACGAAGTAAAAACGGCCAAATTGAAAGGCGCAGAGAGGTCCGCGTACTTCGCACGGAGAGAAGCCGCAAAAATACTGAGAACCGTCCTCGAAGGAGACGCTAACCGCCGTGCTCTTGCTTCCATCAAAACCCTCGTTTATCATCCTTCCGTCAGAAACAAGAAAGCCACATTCGCTCTCATCTGTCAAACCCTCAAACATCTTCCCATTATCAACGATGTTTTGAAAGCTGCTTCTATTCTCAACACCAAGTGGAAGAAGCAACAAGAGTTGGTTTATATTATTGTCTATGATATCCTTTTCGGTCAGGGAGTTCCACTGGTCGGTGATGCAGAGAAGTACCTCATGCGCCACAAGGACCCTCTACATTTACATCTGAAAAAGGTTTTGTCACGGAAGAATGTGACGACCGTTAAAGAGTTGTTTGCTCTACAAGAGGTTCCTGATGTTTCTCTACCTCGAAATGTTCGTGTGAATACACTTAAAATGGATGTTGATTCTGCCTTAGTTGAACTTCAGAAAAAATACTCGGTTCAAAAGGATGATTTAGTGCCTGACTTGTTAGTACTCCCTCCAGGAACTGATTTACATGATCATCCTCTTGTCAAGAACGGAAGCATATTTCTGCAAGGTAAGGCGAGTTCAATGGTGGCACCGGCTCTTAGCCCTGAACCAGGATGGGAGGTTCTTGATGCATGCGCGGCACCAGGCAACAAAACTGTCCACCTTGCCGCCCTTATGAAGAGAAAGGGTAGGATTATAGCATGTGAGCTAAAAAAGGAAAGGATTAAGCGCTTGAATGACACCATAAAGCTATCCGGAGCTTCCAACATACAGGTTCTCAATGAGGATTTCTTGAACATAAATCCCAAGGACCCTTCGTATTCTAAGGTAAAGTATATTTCCTGTTGGTCTGTTACTCCGTCTACCAGATTGAACTGTCACTTGTTCGTTTTGTGTGTAACTGTTATAGACTTATCATTGCAGTTAAAAGCTATTCTTTTAGATCCGTCCTGTTCTGGTTCTGGTACTGCCGCTTCTAGACTAGACCATCTGCTTCCATCTAAAGCAGCAGGTGATATCGACACAGAAAGATTGAACAAGCTTGCAGCTTTTCAGAGAAAAGCTCTTGAGCATGCCTTCCTTTTTCCAGCTTTGGAAAGAATTGTATACAGTACATGTTCAATAAACCAAATTGAGAATGAAGATGTTGTGAAATCTGTTCTGCCTATAGCCGAATCGTACGGGTTCCAACTGGCAAAGCCCTTCCCCGAGTGGCAGTGTCGTGGTCTTCCAGTTTTTGATGGCGCTGAGAACCTTGTTCGAACAGATCCTGCCAAGCACGGAGAGGGTTTCTTCATTGCCTTGTTTGTCAAGAAAGATGCTAACCTTTCAGTGAGGTCAAATAAAAATGATAATAAGACTCTCCCCAATTCTACCAGAATTAGAAACGTGCGAAGGAAGATACCGATGTTCATTCACACTAACATGTTCAAAATGTGGTTACATGATCAATTGAACCAGCGTCAAAATTTGAGGAATAGAAGATATTTTTCCTGTCAGTGTAAAAACCATTCATAA 1656 0.4348 MRIRKPHNNKKNVAAAAAAAAGKGENEVKTAKLKGAERSAYFARREAAKILRTVLEGDANRRALASIKTLVYHPSVRNKKATFALICQTLKHLPIINDVLKAASILNTKWKKQQELVYIIVYDILFGQGVPLVGDAEKYLMRHKDPLHLHLKKVLSRKNVTTVKELFALQEVPDVSLPRNVRVNTLKMDVDSALVELQKKYSVQKDDLVPDLLVLPPGTDLHDHPLVKNGSIFLQGKASSMVAPALSPEPGWEVLDACAAPGNKTVHLAALMKRKGRIIACELKKERIKRLNDTIKLSGASNIQVLNEDFLNINPKDPSYSKVKYISCWSVTPSTRLNCHLFVLCVTVIDLSLQLKAILLDPSCSGSGTAASRLDHLLPSKAAGDIDTERLNKLAAFQRKALEHAFLFPALERIVYSTCSINQIENEDVVKSVLPIAESYGFQLAKPFPEWQCRGLPVFDGAENLVRTDPAKHGEGFFIALFVKKDANLSVRSNKNDNKTLPNSTRIRNVRRKIPMFIHTNMFKMWLHDQLNQRQNLRNRRYFSCQCKNHS 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01596 551 Gene3D Vaccinia Virus protein VP39 235 492 IPR029063 -
Vivi3g01596 551 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 55 485 IPR023267 GO:0001510
Vivi3g01596 551 PRINTS RNA (C5-cytosine) methyltransferase signature 226 240 IPR023267 GO:0001510
Vivi3g01596 551 PRINTS RNA (C5-cytosine) methyltransferase signature 411 427 IPR023267 GO:0001510
Vivi3g01596 551 PRINTS RNA (C5-cytosine) methyltransferase signature 467 484 IPR023267 GO:0001510
Vivi3g01596 551 PRINTS RNA (C5-cytosine) methyltransferase signature 356 368 IPR023267 GO:0001510
Vivi3g01596 551 PRINTS RNA (C5-cytosine) methyltransferase signature 255 265 IPR023267 GO:0001510
Vivi3g01596 551 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 169 485 IPR001678 GO:0008168
Vivi3g01596 551 Pfam 16S rRNA methyltransferase RsmB/F 245 313 IPR001678 GO:0008168
Vivi3g01596 551 CDD AdoMet_MTases 254 323 - -
Vivi3g01596 551 Gene3D Sun protein; domain 3 170 234 - -
Vivi3g01596 551 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 177 485 IPR029063 -
Vivi3g01596 551 FunFam Putative 28S rRNA (Cytosine-C(5))-methyltransferase 170 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01596 Vivi-Chr3 26152578 26156488 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01596 K15264 - gmx:100811850 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01596 3 26152578 26156488 Vivi3g01596 3 26152578 26156488 ECH