Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01590 ATGGATTTCAGGCTAATGGGTTTAGACTCTCCCCTCTTCAACACTCTCCACCACATTATGGACCTCACAGACGACTCAACCGACAAGAACTTAAACGCTCCAACAAGAACATATGTTCGTGATGCAAAGGCAATGGCTGCAACTCCCGCGGACGTGAAAGAGTATCCAAATTCATACGTGTTTGTGGTGGACATGCCTGGGTTAAAATCTGGTGACATAAAGGTTCAGGTTGAAGATGAGAATGTGCTATTGATAAGTGGTGAGAGAAAGAGAGAAGAAGAGAAAGAAGGTGTTAAATATTTGAAGATGGAAAGAAGGGTCGGTAAGTTTATGAGGAAGTTTGTGTTACCAGAGAATGCTAATGTTGAAGCTATCTCTGCTATTTGTCAAGATGGTGTTCTAACCGTTACAGTTAATAAATTGCCTCCACCTGAACCAAAGAAACCTAAGACTATTGAGGTTAAGATTGCTTGA 474 0.4135 MDFRLMGLDSPLFNTLHHIMDLTDDSTDKNLNAPTRTYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRVGKFMRKFVLPENANVEAISAICQDGVLTVTVNKLPPPEPKKPKTIEVKIA 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01590 157 Pfam Hsp20/alpha crystallin family 51 155 IPR002068 -
Vivi3g01590 157 Gene3D - 8 156 IPR008978 -
Vivi3g01590 157 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 41 157 IPR002068 -
Vivi3g01590 157 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 12 155 IPR031107 -
Vivi3g01590 157 FunFam 17.3 kDa class II heat shock protein-like 11 156 - -
Vivi3g01590 157 SUPERFAMILY HSP20-like chaperones 23 149 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01590 Vivi-Chr3 26060806 26061728 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01590 K13993 - gmx:111605749 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01590 3 26060806 26061728 Vivi3g01590 3 26060806 26061728 ECH