Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01574 ATGGCTTCTGCTTCTTTTGCAACAGCTCTACCACTTAGTTCTTCAACCCAAAACAAGCTGAAAAACCCATCCTCCCAATCCCTTTTCAGACCACTACCAGTAACACAACCAAAGAGAATCACACAGTCAAAATCCAAGGTTGTGATCAATGCATCTTTGAAAGAGAAGGCAGTGACAGCACTTACAGCTGCATCCTTGACAGCTTCCATGGTAATTCCTGATGTGGCTCATGCAGCTGGATCTGATCTCTCACCTTCTCTCCAGAACTTTCTGCTAAGCATTTTTGCTGGTGGAGCTGTGTTAACTGCTATACTTGGAGCTGTTATTGGAGTTTCCAACTTTGATCCTGTTAAGAGAGCTTAA 363 0.4353 MASASFATALPLSSSTQNKLKNPSSQSLFRPLPVTQPKRITQSKSKVVINASLKEKAVTALTAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01574 120 MobiDBLite consensus disorder prediction 13 33 - -
Vivi3g01574 120 Gene3D Single helix bin 83 120 - -
Vivi3g01574 120 FunFam Photosystem II psbX protein 82 120 - -
Vivi3g01574 120 PANTHER OS07G0673550 PROTEIN 1 119 - -
Vivi3g01574 120 Pfam Photosystem II reaction centre X protein (PsbX) 84 119 IPR009518 GO:0009523|GO:0015979|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01574 Vivi-Chr3 25804988 25805570 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01574 - - aprc:113864756 150.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01574 3 25804988 25805570 Vivi3g01574 3 25804988 25805570 ECH