Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01573 ATGGCCTTGTCCCCCTCTACATCATTATGCATTCTCCCAACTAACCCAATCACTCCAACACCCAAATTCAGATTCTCAACTAACCTTGTTTTTACTGTGAATTTGCCAAGGAAATTATCCATTAGAAGCTCTGGTGAAAGCTCTGCAGGAGCAACAGAGGTAGATTCAGAGGATTCCATTGAGCTTCCAAAAGAATCGTCATCTTTAATTTCTACTCTCAATGTAGAAAGAGCTCTCCGTGGTATACCAATAACAGACGCAGATCATTATGGTAGACTTGGATTACCAAGAGGATGTCCTTATGACATGGTGCCAGTTGCGTATAACAACAAGGTTCAAGAATTGGAGAGTCAAGATTTAGAGAAAGACATACTCAACAAGAAATTGGAGCTTCTCAGAGAATCATACACCATCATGTCAACACCAGAAGAAAGAAGAATGTATGACTGGAGTTTGGCCAGAGAAGGTAACACAGAAAAATTCATTTGGCCATATGAGGTTGATATCCTAGGGATTGAAAAAGGAGAGCCTCCAGCACAGGAACCTGAGGATGTTGGACCAACCAGACTGGTTGGATACTTCCTTGTGGGATGGATAGTGCTAGCATTTGTGTTATCAATTGGACTAAACTTATAG 636 0.4119 MALSPSTSLCILPTNPITPTPKFRFSTNLVFTVNLPRKLSIRSSGESSAGATEVDSEDSIELPKESSSLISTLNVERALRGIPITDADHYGRLGLPRGCPYDMVPVAYNNKVQELESQDLEKDILNKKLELLRESYTIMSTPEERRMYDWSLAREGNTEKFIWPYEVDILGIEKGEPPAQEPEDVGPTRLVGYFLVGWIVLAFVLSIGLNL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01573 211 FunFam NAD(P)H-quinone oxidoreductase subunit U chloroplastic 70 161 - -
Vivi3g01573 211 Coils Coil 115 135 - -
Vivi3g01573 211 MobiDBLite consensus disorder prediction 42 61 - -
Vivi3g01573 211 SUPERFAMILY Chaperone J-domain 81 152 IPR036869 -
Vivi3g01573 211 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT U, CHLOROPLASTIC 6 210 IPR044199 GO:0009535|GO:0010598
Vivi3g01573 211 Gene3D DnaJ domain 83 161 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01573 Vivi-Chr3 25743835 25744923 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01573 K23052 - gmx:100793741 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01573 3 25743835 25744923 Vivi3g01573 3 25743835 25744923 ECH