Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01540 ATGGCGGCGGATGAGGCGTGGTGTGTGGTCACCGGAGGCCGCGGCTTCGCCGCACGACATTTAGTCGAAATGCTAATCCGATTAAACACCTACTGCGTCCACATCACCGATTTGGGACCCACCATTGAACTCGAACCCTCCGAACAGTTAGGTCTTCTCGGTCAAGCTCTACACTCCGGTCGTGCTCAATACGTCTCCGTCGATCTTCGCAACAAGGCTCAACTCTTGAAAGCGTTTGAAGGAGTTGAATTTGTGTTTCATATGGCTGCTTCGAATTCTTCTATTAACAATTATCAGTTACATTATTCAGTTAGTGTTGAAGGAACAAAGAATGTTATTGAAGCGTGTGTGGAATTAAAAGTGAAGAGACTCATTTATACTAGTTCTCCTAGTGTTGTCTTTGATGGTGTTAACGCAGTTCATAATGGAAACGAATCATTACCTTATCCACCTAAGCATAACGATCATTACTCGGCAACTAAAGCGGAGGGTGAGGCGTTGGTTATTAAGGCTAACGGGACTGGTGGACTACTAACTTGCTGCATACGCCCTAGCAGTATTTTTGGACCTGGTGATAAACTCTTGGTACCGTCATTGGTTGATGCTGCCAGGGCGGGGAAATCCAAGTTCATTATTGGTGATGGCAATAATGTATATGATTTCACATATGTTGAAAATGTGGCGCACGGCCATATATGTGCTGATCGAGCTTTAGCTTCAGAGGGAAGCGTTTCCGAAAAAGCTGCAGGACAGGCATACTTCATCACAAATATGGAACCTATAAAGTTTTGGGAGTTCATGTCTCTGATTTTGGAAGGTCTTGGATATCAAAGGCCAAGAATAAAGATCCCTGCATTTGTTGTCATGCCAATTGCACATTTGGTGGAGTTGATATATAGGCTTCTTGGCCCATATGGGATGAAGGTGCCTCAGCTAACCCCGTCAAGAATAAGGCTCTTATCCTGCACCAGATCTTACAATAGCTCAAAAGCAAAGGATCGCCTTGGCTATGTACCCGTTGTAACTCTACAAGAAGGCTTGCGGATGACAATTGAATCATACCCACATTTGAGGGCTGAAAATCAAGTTACGTCTAAAAGAGAAGGTCCCTCCAAAGCTTCTGTATATCTTGGAAGTGGAAGAGTTGCAGACACTTTACTTTGGAAGGATAAAAAGCAAACTTTCACCACATTGTTAGTCTCGATAGCAATATATGTCAACTTCATTGCATCTGAGAATACCTTCATTACTGCTCTTGCAAAGCTTCTAATTTACTCATCAATCGGTTTATTCGTTCATGGCATTTTTCCTGCAAAAATATTGGGGTACACTATTGAGAAAATGCCCCCATCATGGTTTCATTTATCAGAAGATAGGTCAAATCGAATTGCTCTCAGAGTAGCCTCATCTTGGAATTTTGCTGTGAGTGCTTTAAAGTCTATCGCAGAAGGGAATAATTCGGTGTTGTTCTTCAAGGTTGTTTTCTCTATGCTCATTCTTAGCTTCCTAGGAGCATTTTCACTTCATAACTTGTATACTATAGGACTTACCTTAGCGTTTATAGCTTTCTACGTTTATGAAAAGAAGGAGGAAGACATTGACAGCATAGTTATAAAAACACATACTTTTGGGTGCAAGTTGAAATATGATATCACCAAGAAGTTTCTTAATTCAAAGAAAGATTGA 1686 0.4158 MAADEAWCVVTGGRGFAARHLVEMLIRLNTYCVHITDLGPTIELEPSEQLGLLGQALHSGRAQYVSVDLRNKAQLLKAFEGVEFVFHMAASNSSINNYQLHYSVSVEGTKNVIEACVELKVKRLIYTSSPSVVFDGVNAVHNGNESLPYPPKHNDHYSATKAEGEALVIKANGTGGLLTCCIRPSSIFGPGDKLLVPSLVDAARAGKSKFIIGDGNNVYDFTYVENVAHGHICADRALASEGSVSEKAAGQAYFITNMEPIKFWEFMSLILEGLGYQRPRIKIPAFVVMPIAHLVELIYRLLGPYGMKVPQLTPSRIRLLSCTRSYNSSKAKDRLGYVPVVTLQEGLRMTIESYPHLRAENQVTSKREGPSKASVYLGSGRVADTLLWKDKKQTFTTLLVSIAIYVNFIASENTFITALAKLLIYSSIGLFVHGIFPAKILGYTIEKMPPSWFHLSEDRSNRIALRVASSWNFAVSALKSIAEGNNSVLFFKVVFSMLILSFLGAFSLHNLYTIGLTLAFIAFYVYEKKEEDIDSIVIKTHTFGCKLKYDITKKFLNSKKD 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01540 561 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 8 353 - -
Vivi3g01540 561 Gene3D - 1 358 - -
Vivi3g01540 561 Pfam Reticulon 382 538 IPR003388 -
Vivi3g01540 561 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 9 283 IPR002225 GO:0003854|GO:0006694|GO:0016616
Vivi3g01540 561 FunFam Reticulon-like protein 1 359 - -
Vivi3g01540 561 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 354 IPR036291 -
Vivi3g01540 561 ProSiteProfiles Reticulon domain profile. 382 561 IPR003388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01540 Vivi-Chr3 25405631 25414022 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01540 9 371 Lipid Metabolism Gene Families AT2G33630 31.234 6.31e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01540 K23558 - gmx:100816854 907.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01540 3 25405631 25414022 Vivi3g01540 3 25405631 25414022 ECH