Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01539 ATGGCGAATTTGGATCACACTCACTTCTCCGACGACGACGACAACGACGATTTCGAACTTCCTCTTACTCAACCTCTTTCACTTTCCAACAATCAACGACCATCCAAAAAACCCAAAACCAAAACGACACCGTTTCCTGGCAAAGAGAACATTCCCCCTTTCTCTCCCATTCATAATCCCATTCACAATCACAGTGACAGTTACGATATCGGTAACTGTAGCTTGGATTTCATTCCTTCCACCTTAGATTCTGATGCCACAGTTCAAGGTGTTTGTTCTTCTGTATCGGAGCTGAAGAAGGATAGTAAACACGCTTATTCGAACAATTCGTTAGAGTCTAAGCTGGTGGTGTCGAGAAGTAACGTGTTTGGTTATGGAGAGTCTAGTTCGAAGGGGAGTTTGCACGATGAGTTTGATGGTTCGGTTGGTTGTCCTCTGTGTGGTGATGATATTTCTGATTTAACGGAGGAAGAGCGGAACTTTCATACCAATCAATGTCTTGATAAAACTGGAGAAGATGATGCTCTTCCCAGTGATGAGATGGGTGCTCAATTTGGGATGAAAGACTCTCCTGTTGTTGATTGGATACGTGGTCTCGGGTTAGCTAAATATGAAGAAGTTTTTGTCAGAGAAGAAGTTGATTGGGATACCTTGCAATGGCTGACTGAAGAGGATCTCTTAAACATGGGTATATCTGCACTTGGTCCCAGAAAAAAGATCGTGCATGCCCTGTCAGAACTTAGAAGAGGAATTGTCCCTTCAAATGAAAATAATGAGAATTCTGGGGTAGAGCCCAGAAGGATTAGAAATCAGAATGTCAGATCGCAACATGATAAATCTGAACGAAAAGTAGACGGTACTGTTAAACCAGTGGCAAACAAATTGATCACTCAATATTTTCCGGGATTTGCTACCAATGAGAAGAAAGTTTCTGCCCCTCCTGTAGAACAACCTGAAGTGAAAAACAGTGGCTCAATTTCTGGTCGTAAGCGCAAAGCAAAAAATATGTCAATAAGTACAAAGACTCGTGATGTTCCTAAATGGTGTACCATACAAGGAACACCTTTCCGTGTGGACGCTTTCAAATACCTAAGAGGAGATTGTTCCCACTGGTTTCTTACACACTTTCACATGGACCATTATCAAGGTCTCACCAAGTCGTTCAATCATGGAAAGATCTATTGCTCCTCTGTTACAGCTAGACTTCTAAATATGAACATAGGGATTCCATATGATAAATTACATATTTTGCCTCTAAACCAAAAGGTTGAAATAGCTGGTATTGGCGTGACTTGCTTGGATGCTAACCACTGTCCAGGTTCCATAATAATACTCTTTCAACCTCCTAATGGTCAGGTGGTACTTCATACAGGCGATTTTCGTTATAGTGAAGAAATGGCAAACAACCCTTTCCTGCAGATACGTCCTATTAATACTTTAATTCTTGATACCACATACTGCAATCCACAGTATGATTTTCCAAAACAAGAGGCTGTAATACAATTTGTTATTGATGCCATCCAAGCAGAAGCTTTTAATCCCAAGACTCTTTTTCTAATTGGCAGCTATACAATTGGAAAAGAAAGGCTATTCTTGGAGGTTGCTCGTTCGCTTCGCAAAAAGGTTTACGTGACTGCAGCAAAATTACGCCTTTTACAATGTTTAGAATTTACTGAGGAGGATATGCAGTGGTTTACTTCAAATGAGCATGAAAGCAATATTCATGTTGCCCCTATGTGGACACTCGCAAGCTTCAAAAGATTGAAGCACATATCAAGTCAATATGCGAGTCGGTTCAGTCTTATAGTTGCTTTCTCTCCTACTGGTTGGACATTTGGCAAAGGTAAAAAGAAGTCTCCTGGAAGAAGGTGGCAGCAGGGTACTATCATAAGGTATGAAGTTCCTTACAGCGAGCATTCCAGCTTTACAGAACTCAAAGAGTTTCTAAATTTCGTATCTCCCGATAACATTATACCAAGTGTGAATAATGATGGACCAGAATCTGCGAACGCAATGGTTTCTCTCCTGTCAACTTGA 2037 0.4089 MANLDHTHFSDDDDNDDFELPLTQPLSLSNNQRPSKKPKTKTTPFPGKENIPPFSPIHNPIHNHSDSYDIGNCSLDFIPSTLDSDATVQGVCSSVSELKKDSKHAYSNNSLESKLVVSRSNVFGYGESSSKGSLHDEFDGSVGCPLCGDDISDLTEEERNFHTNQCLDKTGEDDALPSDEMGAQFGMKDSPVVDWIRGLGLAKYEEVFVREEVDWDTLQWLTEEDLLNMGISALGPRKKIVHALSELRRGIVPSNENNENSGVEPRRIRNQNVRSQHDKSERKVDGTVKPVANKLITQYFPGFATNEKKVSAPPVEQPEVKNSGSISGRKRKAKNMSISTKTRDVPKWCTIQGTPFRVDAFKYLRGDCSHWFLTHFHMDHYQGLTKSFNHGKIYCSSVTARLLNMNIGIPYDKLHILPLNQKVEIAGIGVTCLDANHCPGSIIILFQPPNGQVVLHTGDFRYSEEMANNPFLQIRPINTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAEAFNPKTLFLIGSYTIGKERLFLEVARSLRKKVYVTAAKLRLLQCLEFTEEDMQWFTSNEHESNIHVAPMWTLASFKRLKHISSQYASRFSLIVAFSPTGWTFGKGKKKSPGRRWQQGTIIRYEVPYSEHSSFTELKEFLNFVSPDNIIPSVNNDGPESANAMVSLLST 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01539 678 SMART SAM_4 185 250 IPR001660 GO:0005515
Vivi3g01539 678 CDD SNM1A-1C-like_MBL-fold 340 489 - -
Vivi3g01539 678 FunFam DNA ligase 6 351 510 - -
Vivi3g01539 678 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 340 673 - -
Vivi3g01539 678 Pfam SAM domain (Sterile alpha motif) 190 248 IPR001660 GO:0005515
Vivi3g01539 678 FunFam DNA cross-link repair 1A protein 492 639 - -
Vivi3g01539 678 MobiDBLite consensus disorder prediction 22 39 - -
Vivi3g01539 678 Pfam DNA repair metallo-beta-lactamase 560 664 IPR011084 -
Vivi3g01539 678 SUPERFAMILY SAM/Pointed domain 189 249 IPR013761 -
Vivi3g01539 678 MobiDBLite consensus disorder prediction 270 284 - -
Vivi3g01539 678 Gene3D - 183 251 IPR013761 -
Vivi3g01539 678 MobiDBLite consensus disorder prediction 253 269 - -
Vivi3g01539 678 SUPERFAMILY Metallo-hydrolase/oxidoreductase 356 660 IPR036866 -
Vivi3g01539 678 MobiDBLite consensus disorder prediction 253 284 - -
Vivi3g01539 678 CDD SAM_superfamily 192 246 - -
Vivi3g01539 678 ProSiteProfiles SAM domain profile. 187 250 IPR001660 GO:0005515
Vivi3g01539 678 Gene3D - 351 661 IPR036866 -
Vivi3g01539 678 MobiDBLite consensus disorder prediction 310 339 - -
Vivi3g01539 678 Pfam Beta-lactamase superfamily domain 372 491 IPR001279 -
Vivi3g01539 678 MobiDBLite consensus disorder prediction 1 62 - -
Vivi3g01539 678 Gene3D - 492 639 - -
Vivi3g01539 678 MobiDBLite consensus disorder prediction 318 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01539 Vivi-Chr3 25397527 25403931 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01539 189 244 Glycosyltransferase AT3G07170 50.000 1.74e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01539 K15340 - gmx:100816321 949.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01539 3 25397527 25403931 Vivi3g01539 3 25397527 25403931 ECH