Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01532 ATGGCTACTAATGAACGTGACATGTTCTCCGCTGAGATTGTGAACCGTGGTATCGAATCCTCAGGTCCGAACGCCGGTTCATTGACGTTCTCCGTGAGGGTTCGAAGACGGTTACCGGACTTTCTTCAGTCTGTTAACCTGAAGTATGTCAAACTAGGTTATCATTATCTTATAAACCATGGTGTTTATTTGTTCACTGTGCCAATCCTACTTTTGGTGTTTAGTGCTGAGATTGGTAGTTTGAGTAAAGAAGATCTTTGGAAGAAGATTTGGGATGATGCAACCTATGATCTTGCTTCTGTTCTCTCTTCTCTTGCTGTTTTTGTTTTCACTTTCACTCTTTACTTCATGTCGAAGCCTCGTCCTATTTATCTCATTGATTTTGCTTGCTATCAACCAGATGATGAACTCAAGGTATCAAGGGACCAATTGATAGAGCTAGCAAGATCATCAGGAAAATTTGACCAAGAAAGTCTAGATTTTCAAAAAAGGATAGTAATGTCATCAGGAATAGGAGATGAAACCTACATTCCAAAATCAATAGCATCAAGTGAAAACACAGCAACAATGAAAGAAGGTAGAGCTGAAGCATCAATGGTTATGTTTGGAGCACTTGACGAACTCTTTGAGAAAACCGGAATTAGGCCAAAAGATGTTGGTGTTCTTGTAGTAAACTGCAGTATATTCAATCCAACACCATCACTATCAGCTATGATTATAAATCATTATAAGATGAGAGGAAATATTCTGAGTTATAATCTTGGTGGTATGGGATGTAGTGCTGGAATTATTGCTGTTGATTTGGCTAGGGATATTCTTCAATCTAACCCTAGTAACTATGCTGTAGTTGTGAGTACTGAAATGGTTGGATTTAACTGGTATCAAGGAAAAGAAAGATCTATGCTTATTCCTAATTGCTTCTTTCGTATGGGTTGCTCCGCGGTTTTGCTCTCTAATCGTCGTCGCGATTATAGCCGTGCGAAGTATCGTCTTGAACACATTGTTCGTACTCATAAAGGCGCTGATGATCGCAGTTTCAGGTGTGTGTACCAAGAGGAAGATGATCAAAAGTTCAAGGGAATTAAGATAAGCAAAGACTTGATCGAAATCGGCGGAGAAGCTTTGAAAACCAACATCACAACCCTAGGGCCATTAGTCCTCCCATTTTCCGAGCAGCTTATTTTCTTTGCAACCCTAGTTTGGAGGAACTTATTTGGAGGAGGCAAAAAATCTGATAAGAACTCAACATCCTCATCCTCATTATCAACAAACAAGCCCTACATTCCTAACTACAAACTCGCATTCGAGCATTTCTGCGTGCACGCTGCAAGCAAAGCAATCCTCGACGAGCTTCAAAAGAATCTCGAACTGAGTGACAAAAACATGGAAGCTTCAAGAATGACGCTGCACCGATTCGGCAACACTTCTAGCAGCAGCATTTGGTATGAGCTTGCTTATATGGAAGCTAAGGAGAAGGTGAAAAGAGGAGACCGTGTTTGGCAGCTTGCATTTGGTTCTGGATTCAAGTGTAACAGTGCTGTTTGGCGTTCAATGGGACGAGTTGCAAAACCAACTTCTAGGAACCCTTGGCTTGACTGCATCAATGCATATCCTGCTCAACTCAATTGA 1629 0.4101 MATNERDMFSAEIVNRGIESSGPNAGSLTFSVRVRRRLPDFLQSVNLKYVKLGYHYLINHGVYLFTVPILLLVFSAEIGSLSKEDLWKKIWDDATYDLASVLSSLAVFVFTFTLYFMSKPRPIYLIDFACYQPDDELKVSRDQLIELARSSGKFDQESLDFQKRIVMSSGIGDETYIPKSIASSENTATMKEGRAEASMVMFGALDELFEKTGIRPKDVGVLVVNCSIFNPTPSLSAMIINHYKMRGNILSYNLGGMGCSAGIIAVDLARDILQSNPSNYAVVVSTEMVGFNWYQGKERSMLIPNCFFRMGCSAVLLSNRRRDYSRAKYRLEHIVRTHKGADDRSFRCVYQEEDDQKFKGIKISKDLIEIGGEALKTNITTLGPLVLPFSEQLIFFATLVWRNLFGGGKKSDKNSTSSSSLSTNKPYIPNYKLAFEHFCVHAASKAILDELQKNLELSDKNMEASRMTLHRFGNTSSSSIWYELAYMEAKEKVKRGDRVWQLAFGSGFKCNSAVWRSMGRVAKPTSRNPWLDCINAYPAQLN 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01532 542 PANTHER 3-KETOACYL-COA SYNTHASE 101 539 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vivi3g01532 542 PIRSF Very_long_ch_3-ktacl-CoA_syn 40 542 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vivi3g01532 542 SUPERFAMILY Thiolase-like 332 517 IPR016039 GO:0016746
Vivi3g01532 542 FunFam 3-ketoacyl-CoA synthase 133 517 - -
Vivi3g01532 542 Coils Coil 448 468 - -
Vivi3g01532 542 SUPERFAMILY Thiolase-like 109 326 IPR016039 GO:0016746
Vivi3g01532 542 Pfam FAE1/Type III polyketide synthase-like protein 115 403 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vivi3g01532 542 Gene3D - 125 518 IPR016039 GO:0016746
Vivi3g01532 542 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 436 516 IPR013747 -
Vivi3g01532 542 CDD CHS_like 106 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01532 Vivi-Chr3 25236761 25239939 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01532 3 541 Miscellaneous Gene Families AT2G26250 74.727 0.0 881
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01532 K15397 - gmx:100778487 947.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01532 3 25236761 25239939 Vivi3g01532 3 25236761 25239939 ECH