Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01500 ATGGCGTTTTTGAGATCTATCGTTTTTTCCGCAGTTTTTCTCTGTCTCGTTCACTCCGCTTTCTGTTTCTACCTTCCCGGTGTCGCTCCTCAGGACTTCGTTAAGGGAGAAGTTTTGGAAGTGAAAGTAAACAAACTAACATCAATAAAGACCCAGCTTCCATACTCTTATTATTCACTTCCTTATCCTGCACCCAAAAAAATACAAGATAGTGCAGAAAATCTTGGGGAAGTGCTTCGCGGTGATCGCATTGAGAATTCACTATATGTGTTTAAAATGCGCGAGCCACAAATGTGTAATATCGTGGGTAAAGTTAAACTTGATGCTAAAAATGCCAAGGAGTTCAAAGAGAAGATCAATGATGAGTATCGGGTGAACATGATCCTAGATAACCTTCCTCTAGTTGTTCCCATCAAAAGGAATGATCAGGATTCTACTGTCTATCAGCTTGGTTACCATGTTGGACTAAAAGGGCAGTATAGTGGGAGCAAGGAGGAAAAATATTTTATCCACAATCATTTGGCATTTACCGTCAAGTATCATAGAGATGTGCAAACTGAATCTGCTAGAATTGTGGGCTTTGAGGTTAAGCCGTTCAGTGTTAAACACGAGATTGATGGTAAATGGGATGAGCAAAAGACTCGTTTGACAACATGTGACCCTCACACTAAGCACACAGTTATGAACAACAACTCTCCTCAAGAAGTTGAAGAGAACAAGGAAATTATCTTCACATATGATGTTGATTTCCAGGAGAGTGATGTGAAGTGGGCTTCAAGATGGGATGCCTATCTGCTAATGAATGATGACCAAATCCACTGGTTCTCTATTGTTAACTCATTAATGATTGTTCTATTCCTTTCGGGCATGGTGGCAATGATAATGCTGCGGACACTATACCGTGACATTGCAAAGTATAACGAGCTTGAGACCCAAGAAGAAGCCCAAGAGGAGACTGGTTGGAAGCTTGTCCACGGGGATGTATTTAGGCCTCCTATCAACTCAGATCTGCTGTGTGTTTATGTTGGAACTGGTGTTCAGTTTTTTGGGATGATACTAGTAACCATGATATTTGCCATCCTGGGGTTCCTTTCTCCTTCAAACCGAGGTGGGCTCATGACAGCCATGCTTTTGGTTTGGGTTTTCATGGGAATATTTGCTGGTTATTCTTCAACTCGCTTGTACAAAATGTTCAAAGGATCAGAATGGAAGAAAATTGCCCTCAGGACAGCAACCTTGTTCCCTGCAATTGTCTCTGTCATTTTCTTTATACTAAACGGTCTCATATGGGGCCAAAAATCATCTGGAGCTGTGCCATTTGGTACAATGTTTGCTCTGATCTTCTTATGGTTTGGGATCTCCGTTCCACTTGTTTTCGTGGGTAGTTATATTGGTTTCAGAAAACCAGCAATTGAGAATCCCGTAAAGACCAACAAAATCCCAAGGCAGATCCCTGAGCAGGCCTGGTACATGAACCCAGCCTTCTCCGTTTTGATTGGAGGAATACTTCCTTTTGGAGCTGTTTTCATTGAACTTTTCTTTATCCTTACTTCAATCTGGTTGAATCAGTTCTACTACATCTTTGGGTTCCTCTTTTTGGTCTTCATCATCCTTGTTGTCACTTGCGCTGAAATAACCATTGTGCTCTGCTACTTCCAGTTGTGCAGTGAAGACTACTTGTGGTGGTGGCGTTCATACCTTACATCTGGTTCTTCTGCACTGTACCTCTTTCTTTATGCAACATTCTACTTCTTCACCAAGCTTGAAATCACAAAGTTGGTGTCTGCAATATTTTACTTTGGATACATGCTTATAGCTTCTTATGCGTTTTTTGTGGTAACTGGTACTATTGGATTCTATGCATGCTTTTGGTTCACAAGGCTCATCTACTCTTCAGTCAAAATTGATTAG 1911 0.4118 MAFLRSIVFSAVFLCLVHSAFCFYLPGVAPQDFVKGEVLEVKVNKLTSIKTQLPYSYYSLPYPAPKKIQDSAENLGEVLRGDRIENSLYVFKMREPQMCNIVGKVKLDAKNAKEFKEKINDEYRVNMILDNLPLVVPIKRNDQDSTVYQLGYHVGLKGQYSGSKEEKYFIHNHLAFTVKYHRDVQTESARIVGFEVKPFSVKHEIDGKWDEQKTRLTTCDPHTKHTVMNNNSPQEVEENKEIIFTYDVDFQESDVKWASRWDAYLLMNDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDIAKYNELETQEEAQEETGWKLVHGDVFRPPINSDLLCVYVGTGVQFFGMILVTMIFAILGFLSPSNRGGLMTAMLLVWVFMGIFAGYSSTRLYKMFKGSEWKKIALRTATLFPAIVSVIFFILNGLIWGQKSSGAVPFGTMFALIFLWFGISVPLVFVGSYIGFRKPAIENPVKTNKIPRQIPEQAWYMNPAFSVLIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFIILVVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSAIFYFGYMLIASYAFFVVTGTIGFYACFWFTRLIYSSVKID 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01500 636 Pfam Endomembrane protein 70 54 592 IPR004240 GO:0016020
Vivi3g01500 636 PANTHER TRANSMEMBRANE 9 SUPERFAMILY PROTEIN 22 636 IPR004240 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01500 Vivi-Chr3 24727481 24731456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01500 1 636 Miscellaneous Gene Families AT5G10840 82.844 0.0 1092
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01500 K17086 - gmx:100780976 1145.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01500 3 24727481 24731456 Vivi3g01500 3 24727481 24731456 ECH
Vivi3g01500 3 24727481 24731456 Vivi3g01460 3 24190216 24194123 PCT