Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01463 ATGACTGTCTCACTTCTCTGTTCCTCAGCAACCACGTGTTGTAACAGTATGTCCTTTTGCTATACTTTAACTGATACCAATTTCTATGTTCTCACCAATCATGGGTTGTTCAGAGGTGGAACCAATTTCGTAAAAATGAAAACTTTTTCCAATGGGCCTTTGTTAAATTGGAAGAAAAATGGAAGAGGACATGTGGGTCGTCGTGCATTTAGAACTAGATGTACTCATGAGAGTGATTTAGTTGTGGTAAAAGGTAAGAAGAACAAAACTAAAGTGTCTTCTGAAGAGGTTATGACAGTTTTGAAGTCTATTTCTGATCCAAATTCTGTTTTTTCATACTTTAAGTTAGTTTCTCAGTTGCCTAAATTTGTGCATACCACCGATGCTTGCAATTACATGCTTGAGTTTTTGAGAGAACATGGGAGGGTTGAGGATATGGTTTTTGTGTTTAATTTGATGCAAAAGCAAGTTATTTACAGGAGTTTGGATACTTACATGACTATTTTCAAGGCTCTTTCGATTAAAGGTGGGATTGGAAGAGCGAATTTTGCACTTTGTAAGATGAAGCAAGCTGGGTTTATCTTGAATGCGTATTCGTATAATGGTTTGATTTATATGCTGTTGCCTGGTTTTTGTAAAGAGGCGTTGATGGTTTACAGGAGAATGATCTCAGAAGGGATGAAGCCTAGCATGAAGACGTATTCGGCGTTGATGGTTGCGTTGGGGAGGAGAAGGGACACGGAGAATATTATGAAATTGTTGGAAGAAATGAAGAGGATAGGTTTGAGGCCGAATATATACACGTATACGATATGTATTAGAGCTCTTGGAAGGGCGGGGAGAATCCATGATGCGTGGGGGATTTTTAAGGAAATGGACGATGAAGGATGTGGGCCTGATGTTATCACGTATACGGTTCTTATTGATGCTCTTTGTGCCGCAGGGAAGCTTGACAAGGCTGAGGAGCTATATGTAAAGATGAGAGCGAGCGATCATAGTCCGGATCGGGTGACATACATTACATTGATGGACAAGTTTGGTAAAGTTGGGGACTTGGAAAAAGTGGAAAGATTCTGGAATGAGATGGAAGCTGATGATTATGCCCCTGATGTGGTCACCTACACTATACTTATCGAGGCTTTATGCAAATCTGGTGATGTTGATCGTGCATTCTCTATGTTAGATGTGATGACAAGGGAAGGAATTTTACCAAATCTTCATACTTACAACACATTGATATGTGGATTTTTGAAGGCTAGAAAATTAGACAAGGCAATAGAACTTTTTGAAAATATGGAATCTGTGGGTGTTAAACCAACTGCTTTTTCTTATGTTCTTTTCATTGATTATTATGGAAAATTAGGTGATCCTGGAAAAGCTCTCGACACATTTGAAAAGATGAAAGAGAGAGGCATTATGCCAAGCATAGCAGCGTGCAATGCATCGTTGTATACTCTTGCAGAGACAGGTCAGATCAAAGAGGCAGAAGATATATTCAACGAACTTCACAACTGTGGGCTTTCGCCGAATTCAGTAACCTATAATATGATGATGAAGTGCTATAGCAAAGCAGGGGAAGTAGACAAAGCCATAGATCTTTTGTCTGAGATGATAAGGAAAGGGTGTGAACCAGATGTTATGATAATTAATTCTTTAATCGACACACTTTACAAGGCTGGTCGTGTTGATGAAGCGTGGAAGATGTTCAGCAGGTTGAAGAGTTCGAGGCTAGCTCCTACAGTTGTGACGTACAACATTTTACTTACCGGTCTCGGTAGAGAGGGAAATATCAGAAATGCCCTTGAATTATTCAGTAGTATGACCGAGTCTGGATGCCCTCCAAACACGATAACTTTTAACTCGCTCTTGGACTGTCTTTCCAAGAATGATGCAGTTGATTTGGCGCTGAAGATGTTCTGTAGAATGACAACAATGAACTGTAAACCTGATGTTTTTTCATACAACTCTATCATCTATGGCTTGATAAGAGAAGGCAGAACCGATTACGCGTTTTGGTTTTTTCATCAGATGAAGAAATTTCTTTCCCCTGACTATGTAACTTTGTGCACGCTCCTTCCCGGAGTTGTGCGATGTGGAAGGATTGATGATTCGATCAAGATTGTAATGGAATTTGTACATCAAGAAGGTTTACAGACGAAGTCACAATTCTGGGAAGAACTAATGGAATGCATTTTAACCGAAGCGGAAATAGAGGATAGCATTTCATTTGCTGAAATTTTGGTTTGCAATTCTGTTTGCCAAGATGATCATGTAATGTTACCTCTAATTAGAGTTCTGTGTAAGCGGAAGAAGACCCTCTACGCTCAAAATGTATTCGATAAATTCACTAAAATATTGGGAATTCACCCAACCCTAGAATCGTATAATTGCTTGATGGATGGGCTTCTTAGATCTAGTTTCACTGAAAAAGCTCTAGAACTTTTTGAAGAGATGAAGAACGCAGGTTGTCACCCGAATCATTTCACTTACAACTTGTTGCTTGATGCTCATGGTAAATCTAAGAGTATCAATGAACTCTATGATCTATACAGCGAGATGCGTTGTAAGGGATGCGAGCCTAATGTGATAACTCATAATATTATCATATCCGCGCTTGTGAAATCTAACAACTTGAATAAGGCTTTGGATTTATATTACGAACTCATGAGTGGTAATTTCTCTCCAACTCCTTCTACATATGGTCCTCTTATAGATGGTCTTTTAAAAGCTGGAAGATCTGAGCAAGCAATGAAGATTTTTGAGGAGATGTTAGATTATCAATGCATGCCCAACAGTGTTATTTACAATATTCTCATCAACGGATTTGGGAAATCGGGCGAAATCGATGTTGCTTGTGACTTGTTCAAAAAGATGGTTAAAGAAGGAATAAGGCCAGACTTGAAATCTTACAGCATTCTTGTAGAAAGTTTGTGCATAAGTGGTAGAGTTGACGAAGCTTTCCAGTACTTTCAGGAACTAAAGTTGACCGGTCTTGATCCTGATACAGTTTCGTACAATTTTATAATCAACGGGCTCGCAAAATCGCGTAGATTTGAAGAAGCACTTTCTCTTTTAAATGAAATGAAGAATAGAAGAGTTTCTCCTGATCTTTACACTTACAATGCGTTGATTTTACATCTTGGAATTGCTGGAAAGGTAGACCTGGCTGTAAAGATGTTTGAGGAACTTCAACTTGTGGGTCTAGAACCAAGTGTTTTCACGTATAATGCTCTCATCCGCGGTTATAGTTTGTCGGGAAATAAAGACCAAGCCTTCTCTGTCTTCAAGAAGATGATGGTTGTCGGGTGTAGCCCTAACGCAGGAACATATGCTCAACTGCCTAATAAATGTTGA 3354 0.3918 MTVSLLCSSATTCCNSMSFCYTLTDTNFYVLTNHGLFRGGTNFVKMKTFSNGPLLNWKKNGRGHVGRRAFRTRCTHESDLVVVKGKKNKTKVSSEEVMTVLKSISDPNSVFSYFKLVSQLPKFVHTTDACNYMLEFLREHGRVEDMVFVFNLMQKQVIYRSLDTYMTIFKALSIKGGIGRANFALCKMKQAGFILNAYSYNGLIYMLLPGFCKEALMVYRRMISEGMKPSMKTYSALMVALGRRRDTENIMKLLEEMKRIGLRPNIYTYTICIRALGRAGRIHDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAEELYVKMRASDHSPDRVTYITLMDKFGKVGDLEKVERFWNEMEADDYAPDVVTYTILIEALCKSGDVDRAFSMLDVMTREGILPNLHTYNTLICGFLKARKLDKAIELFENMESVGVKPTAFSYVLFIDYYGKLGDPGKALDTFEKMKERGIMPSIAACNASLYTLAETGQIKEAEDIFNELHNCGLSPNSVTYNMMMKCYSKAGEVDKAIDLLSEMIRKGCEPDVMIINSLIDTLYKAGRVDEAWKMFSRLKSSRLAPTVVTYNILLTGLGREGNIRNALELFSSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTTMNCKPDVFSYNSIIYGLIREGRTDYAFWFFHQMKKFLSPDYVTLCTLLPGVVRCGRIDDSIKIVMEFVHQEGLQTKSQFWEELMECILTEAEIEDSISFAEILVCNSVCQDDHVMLPLIRVLCKRKKTLYAQNVFDKFTKILGIHPTLESYNCLMDGLLRSSFTEKALELFEEMKNAGCHPNHFTYNLLLDAHGKSKSINELYDLYSEMRCKGCEPNVITHNIIISALVKSNNLNKALDLYYELMSGNFSPTPSTYGPLIDGLLKAGRSEQAMKIFEEMLDYQCMPNSVIYNILINGFGKSGEIDVACDLFKKMVKEGIRPDLKSYSILVESLCISGRVDEAFQYFQELKLTGLDPDTVSYNFIINGLAKSRRFEEALSLLNEMKNRRVSPDLYTYNALILHLGIAGKVDLAVKMFEELQLVGLEPSVFTYNALIRGYSLSGNKDQAFSVFKKMMVVGCSPNAGTYAQLPNKC 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01463 1117 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 327 602 - -
Vivi3g01463 1117 Pfam PPR repeat 645 678 IPR002885 -
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 580 614 IPR002885 -
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 896 930 IPR002885 -
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 545 579 IPR002885 -
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 650 680 IPR002885 -
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1071 1105 IPR002885 -
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Vivi3g01463 1117 Gene3D Tetratricopeptide repeat domain 980 1117 IPR011990 GO:0005515
Vivi3g01463 1117 Gene3D Tetratricopeptide repeat domain 210 361 IPR011990 GO:0005515
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 510 544 IPR002885 -
Vivi3g01463 1117 Pfam PPR repeat 442 472 IPR002885 -
Vivi3g01463 1117 Pfam PPR repeat 550 576 IPR002885 -
Vivi3g01463 1117 Pfam PPR repeat 337 365 IPR002885 -
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 509 IPR002885 -
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 615 649 IPR002885 -
Vivi3g01463 1117 Gene3D Tetratricopeptide repeat domain 575 643 IPR011990 GO:0005515
Vivi3g01463 1117 Gene3D Tetratricopeptide repeat domain 433 503 IPR011990 GO:0005515
Vivi3g01463 1117 Gene3D Tetratricopeptide repeat domain 644 717 IPR011990 GO:0005515
Vivi3g01463 1117 Gene3D Tetratricopeptide repeat domain 362 432 IPR011990 GO:0005515
Vivi3g01463 1117 Gene3D Tetratricopeptide repeat domain 504 574 IPR011990 GO:0005515
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1036 1070 IPR002885 -
Vivi3g01463 1117 Pfam PPR repeat family 509 546 IPR002885 -
Vivi3g01463 1117 Pfam PPR repeat family 930 978 IPR002885 -
Vivi3g01463 1117 Pfam PPR repeat family 369 416 IPR002885 -
Vivi3g01463 1117 Pfam PPR repeat family 793 837 IPR002885 -
Vivi3g01463 1117 Pfam PPR repeat family 860 907 IPR002885 -
Vivi3g01463 1117 Pfam PPR repeat family 1000 1044 IPR002885 -
Vivi3g01463 1117 Pfam PPR repeat family 579 628 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 267 301 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 233 265 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 899 931 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 302 335 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 863 896 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 337 371 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 1003 1036 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 549 580 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 969 1002 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 1038 1071 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 443 475 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 372 405 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 1073 1107 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 933 966 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 652 679 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 828 862 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 794 826 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 617 651 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 582 616 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 480 510 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 512 546 IPR002885 -
Vivi3g01463 1117 NCBIfam pentatricopeptide repeat 407 440 IPR002885 -
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Vivi3g01463 1117 SUPERFAMILY HCP-like 906 1099 - -
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Vivi3g01463 1117 Gene3D Tetratricopeptide repeat domain 739 874 IPR011990 GO:0005515
Vivi3g01463 1117 Gene3D Tetratricopeptide repeat domain 73 209 IPR011990 GO:0005515
Vivi3g01463 1117 Gene3D Tetratricopeptide repeat domain 875 979 IPR011990 GO:0005515
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 861 895 IPR002885 -
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 966 1000 IPR002885 -
Vivi3g01463 1117 SUPERFAMILY HCP-like 415 649 - -
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 826 860 IPR002885 -
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 791 825 IPR002885 -
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 931 965 IPR002885 -
Vivi3g01463 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1001 1035 IPR002885 -
Vivi3g01463 1117 Pfam Pentatricopeptide repeat domain 252 310 IPR002885 -
Vivi3g01463 1117 Pfam Pentatricopeptide repeat domain 187 243 IPR002885 -
Vivi3g01463 1117 Pfam Pentatricopeptide repeat domain 1059 1113 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01463 Vivi-Chr3 24206314 24210041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01463 401 925 Glycosyltransferase AT1G05670 23.194 1.06e-47 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01463 - - mtr:11431942 1925.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01463 3 24206314 24210041 Vivi3g01463 3 24206314 24210041 ECH