Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01459 ATGAGATGCACTGTGATAATTGTTCTCTTAACATTATTCACTTTAAACAAACTTTGTGAGTCTAACTCATCTTGTAAAGCATGGCTGGTCCAATCCATTCCTACAGATATGCCTCACCTCTCCCACGTTCCCGGAGTCCTCTCCACCGGGGATGTGCTCCGGTGGCTGGCTGCGAACTCGACTAGTAGACTCGATGTAATTGCTCAGTATTGGCAATTATTAGCTTCACCGGACGATCCTCGCACGGGTGATTATGGTTACACTCGAGAACAGATGCGCGAATTTGGTGCTCATCAAGGTGCTGCAGTTTATGAGGCATTGGATGATGCTGCAGACCGGAATGTTAGTATCAGGTTACTGTCTCACTCTGGGATTTATCCAACATTTAACTTAGAACCATCCAAACTTGCTTCTGGAAGGCCAAATGTTAAGAATGTGACTTTGTTAATGAAGGACTGGTGGGGCTCTGGCATTGTCCATGCCAAAGTTTGGATATCTGATAATAGGGATGTGTACATTGGATCTGCAAACAATGATTGGAAATCTCTAACACAGGTCAAGGAAGTTGGAATTTATCTTACTGGATGTCATGGAATAGCGAAAAAGGTTGAAGTTTACTTTAACAATTTATGGAAACTAGCATCTCTGAATTCTTCAGCTTACACAAAAACAGTGATGGATCAACAATGGCAAGTGGAAAGAAAGGTTCCTTGTTGGTCACATTTCATCAAACCTAGAGAGAGGTGCAAGTCACCTCTTCCTCGATATGTGGAGACTCATCATGTATCAGGGTATCCTATTTTGTCCGATCCTTATATGTTTGAAGCCTCAACTCAAACTCCAGGGAGTAATTATTCAACAAAACTTCCCCAAGTCAACTATCTTTCCTTTGCTCCACCAGAGCTATCATTTGGCAGTTATCAGAGTGATGAACAGGCATGGATTGATACAATTAAATCCGTTGGAACAAGAGAGACGGTTAGAATCAATACCATGGACTGGCTAGGTCAATCACAATATACAGACCAAACAATTTACTGGTCATCGCTATCGTCTGCAATATCAGAGGTTGTGTTTTCCAAGCATGCAACGGTAAAGATATTGGTGGCGTATTGGGCACACTTCATCAATAGCACAGATGATTACTTGAAGTATCTACACTACACCAACACTCTATGCTCCTCTTCAAAATACAACAAATGTTCTGGTAAAGTTGAGATCAAATATTATGTGGTACCGGGTTTCAACAAAACGGGACCTGCATTTCAGAATGGAAGTAGTACAGGAAACATATACCCTGATTTTACAAGAGTGAATCATGGAAAATATGTAGTTAGCAATGTAAGGGCACACATTGGGACAAGCAACCTTGTATGGGACTATTTCTATACAACAACAGGTGTTAGCTTTGGGACATACAGCACTGCCATTGTATCTCAACTTAGGGAAATTTTTGATGCTGATTGGAACTCTCCCTATGCTGTTCCTATTCAAGAGCTGGAGAGAGTCTATATTTCTAGTTTCAAATAG 1530 0.4118 MRCTVIIVLLTLFTLNKLCESNSSCKAWLVQSIPTDMPHLSHVPGVLSTGDVLRWLAANSTSRLDVIAQYWQLLASPDDPRTGDYGYTREQMREFGAHQGAAVYEALDDAADRNVSIRLLSHSGIYPTFNLEPSKLASGRPNVKNVTLLMKDWWGSGIVHAKVWISDNRDVYIGSANNDWKSLTQVKEVGIYLTGCHGIAKKVEVYFNNLWKLASLNSSAYTKTVMDQQWQVERKVPCWSHFIKPRERCKSPLPRYVETHHVSGYPILSDPYMFEASTQTPGSNYSTKLPQVNYLSFAPPELSFGSYQSDEQAWIDTIKSVGTRETVRINTMDWLGQSQYTDQTIYWSSLSSAISEVVFSKHATVKILVAYWAHFINSTDDYLKYLHYTNTLCSSSKYNKCSGKVEIKYYVVPGFNKTGPAFQNGSSTGNIYPDFTRVNHGKYVVSNVRAHIGTSNLVWDYFYTTTGVSFGTYSTAIVSQLREIFDADWNSPYAVPIQELERVYISSFK 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01459 509 Coils Coil 505 509 - -
Vivi3g01459 509 Gene3D Endonuclease Chain A 293 492 - -
Vivi3g01459 509 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 155 182 IPR001736 GO:0003824
Vivi3g01459 509 CDD PLDc_vPLD3_4_5_like_2 294 490 - -
Vivi3g01459 509 CDD PLDc_vPLD3_4_5_like_1 29 196 - -
Vivi3g01459 509 PANTHER PHOSPHOLIPASE D - RELATED 18 500 - -
Vivi3g01459 509 Gene3D Endonuclease Chain A 48 215 - -
Vivi3g01459 509 SMART pld_4 155 182 IPR001736 GO:0003824
Vivi3g01459 509 SMART pld_4 435 461 IPR001736 GO:0003824
Vivi3g01459 509 SUPERFAMILY Phospholipase D/nuclease 100 213 - -
Vivi3g01459 509 SUPERFAMILY Phospholipase D/nuclease 305 503 - -
Vivi3g01459 509 Pfam PLD-like domain 101 211 IPR025202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01459 Vivi-Chr3 24174871 24177360 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01459 K16860 - gmx:100778897 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01459 3 24174871 24177360 Vivi3g01459 3 24174871 24177360 ECH