Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01458 ATGGGTCACGTAGGATCAAGCAAAGACGGTAGCATCGCGGGGCTAGACATGAACGATTTACTCGACGACAACAACGACATGGAAATGGACATTGACCTAGACGAAGATACATCCGAAATCCTCAACGAGCTAGGCGATGACTTGGTGAAATACTTCTGCAGAAAAGCTTCGGTAATGTTCTTCAACGAGTACGGTTTGATCAGCCACCAGATCAACTCGTTTAACCAGTTCGTCACTAGTGGACTTCAGAATACGTTCAATTCCTTCGGAGATCTCACTGTTACTCCGGGGTTTGATCCTTCTAAGAAAGGTGATACCGAGCATTATCGTTACGCTAGGGTTAAGTTTGGTACTGTGACTCTCGATCGACCGAAGTTTTGGTGTAGTGAAAATAATACTCAGGAGTTGAAAATGCTTCCGAGACACGCGCGTCTTCAGAGGATGACTTATGCTTCCAAAATGAGAGTCAATGTTCAAGTTCAGGTGTATATTCCGAAGAAGGTTCGGAGTGATAAATTCAAGACTGGAAAAGAGGAATACATTGATCAAGAGGTTATCATGGATGAGAGCAGGGAAATAACTATTGGTAGGCTGCCTGTTATGGTTAAGTCTGATTTGTGCTGGATGAGTGAAGCTGAAAAAGGTGATTGTGAATTTGACCATGGAGGCTATTTTCTGATCAAGGGTGCTGAGAAGATTTTTATTGCACAGGAGCAAATATTTTTGAAAAGGCTCTGGGTGACAACTGCTCCGTATTGGGCAGTTGCATACAAGTCACAGATGAAGAGAAATAGGATGGTTGTTAAATTAGTGGAAAATTCCATTGTTGAAGGAATCAAAAGCGGGGATAAGTTGCTCACCGTATATTTTCTGTCTGTCGAGGTTCCTGTATGGATATTGTTTTTTGCTCTTGGGGTCACTTCTGATAAAGAGGTTGTTGATCTCATCGATTATGGATTGGGAGATGGAAGAATTGAAAACCTTCTCATTGCATCCATACGTGAGGCAGATGAGAAGTGTGGCGCATTCCGTAGGGGAAAGAATGCTCTTCTTTTCCTAGAGGAACATATTAAAGGTGTCAAGTTTCCACCATCAGAATCTATTGACGAGTGCCTTGACATGTATGTCTTTCCTAACATTAAAGGATTGAAAAGGAAGGCCCGGTATCTGGCATACATGGTGAAGGTTCTTTTACTGGCGTATAATGGCCGCAGAAAAACTGATAATAGAGATGATTTTCGAAATAAGAGGCTTGAGTTGGCTGGTGAGCTACTCGAACGTGAGATTAGAGTGCACTTTGCACACGCTCGGAAGCGACTGGCGAAGGTTCTGCAGAGAGACCTTTATGGAGATCGAGATGTTCGTCAAGTTGAGCACTATCTTGATGCTTCCATTATTACAAATGGTCTTCAAAGAGCATTTTCTACTGGAGCGTGGACACATCCTTTTAAAAGGATGGAAAGGATTTCTGGTGTGGTTGCTACGCTTGGCCGAACCAATCCCTTACAAACCATGGCTGAATTAAGAAGAACAAGGCAACAAGTTCAGTACACAGGAAAGGTTGGGGATGCTAGATACCCGCATCCTTCTCACTGGGGTAAGGTTTGTTTCCTCTCTACTCCTGATGGTGAAAATTGTGGACTTGTAAAAAATTTGTCTGTCACAGGAGTAGTAAGTACCAATGTAACTGAATCTATACTTCCTCACCTGTTTGATTGTGGGATGGAAGAACTTGTTGATGATACTACCACTGTTCTTGGAAAAAAAGACAAAGTCTTCCTAAATGGGGAATGGGTTGGAGTTTGTTCGAATTCCGCATCATTTGTGTCAGAGCTACGAAATCGAAGACGGAGAAAAGAGTTGCCTCCTCAGGTTGAAATCAAAAGAGATCAAATTCAAGAAGAAGTGCGCATATTAACTGATGCAGGAAGGATTCTCCGTCCACTCTTGGTTGTTAGTAATCTGCTCAAGATTAAAGAATCTAAGTCGGAGCATAAATCTTTCCAGTCCCTGTTGGATAATGGCATAATTGAGCTGATTGGTCCTGAAGAAGAAGAGGACTTCAAGACTGCTTGGGGTGTTCAATATTTATTTGGCAAAGAAGGAAAATCTTCTGTGAAGTACACTCACTGTGAGCTTGATATGTCGTTCTTATTGGGTCTAAGCTGTTCAATGGTTCCGTTTGCTAATCATGACCATGCTAGGAGAGTGTTGTACCAATCCCAAAAACATTCCTCGCAGGCTATTGGCTTTTCTACGACAAACCCAAATATAAGAGTCGATGCTTTGTCTCACCAGTTATTCTATCCTCAAAGACCACTATTTCGGACAATGGCTTCTGATTGTCTTGGAAAACCGGGATATCTAGGTCCAAGTAAAGTTCTTCCAAAGTCTGAATTCTATAATGGGCAGAATGCAATTGTAGCTGTTAATGTACATCTCGGATATAATCAAGAAGATTCATTGGTGATGAACCGTGCTTCTTTGCAGCGTGGTATGTTCAGATCTGAGCACATCAGGAGTTACAAAGCTGAGATTGAAAATAAGGAATCTTCAGATAAGAGAAAGAAACCTGAAGACATCGTGAATTTTGGAAAGATACAGAGTAAAATCGGTCGAGTTGATAGCCTTGATGATGATGGCTTTCCATTTGTTGGTGCGAATTTGCAGAGCGGTGATATTATTATTGGGCGATGTGCTGATGCAGGGACTGACCACAGTATAAAGTTAAAACACACTGAAAGGGGTTATGTTCAAAAGGTTGTACTGTCCTCAAATGATGAGGGGAAGAATTTCGCTACTGTTTCATTAAGACAGGTTCGAAGTCCGGTTCTTGGAGATAAGTTCTCTAGTATGCATGGACAAAAGGGTGTTTTAGGATTTCTGGAGTCTCAAGAGAATTTTCCTTTCACAAAACAAGGTATTGTTCCTGATATTGTCATCAATCCGCATGCATTTCCCTCACGACAAACTCCTGGGCAACTCCTAGAGGCTGCTTTAGGAAAGGGTATCGCTTGTGTTGGTTCATTGAAAAATGCTACCCCTTTCTCCACTCCGTCTGTTGAAGCCATTACTGACCAGCTTCACAGAGCTGGCTTTTCAAGATGGGGAAACGAAAGAGTATACAATGGGAGGACTGGTGAGATGGTTCAATCACTAATATTTATGGGCCCAACATTTTACCAGCGACTACACCACATGTCTGAGGACAAAGTGAAGTTCAGGAACACCGGCCCAGTTCACCCGCTAACCCGACAGCCTGTTGCTGACAGAAAGCGATTTGGAGGTATCAAGTTTGGTGAAATGGAGCGAGATTGCCTGATCGCCCATGGTGCATCTTCCAACTTGTATGAACGTCTCTTCACCCTGAGTGATTCGTCTCAGATACACATTTGTAGTAAATGCAAAAATGTTGCAAATGTGATCTTGCGGCCGGTATCTGGTGGGCGGAAAATACGAGGTCCCTATTGCCGATTCTGTGAATCAGCCGATGATATTGTGGTGGCCAGTGTTCCATATGGAGCAAAGTTACTGTCCCAGGAGCTGTTCAGCATGGGCATTAACCTCAAGTTTGACACCGAGATTTGCTAG 3591 0.4277 MGHVGSSKDGSIAGLDMNDLLDDNNDMEMDIDLDEDTSEILNELGDDLVKYFCRKASVMFFNEYGLISHQINSFNQFVTSGLQNTFNSFGDLTVTPGFDPSKKGDTEHYRYARVKFGTVTLDRPKFWCSENNTQELKMLPRHARLQRMTYASKMRVNVQVQVYIPKKVRSDKFKTGKEEYIDQEVIMDESREITIGRLPVMVKSDLCWMSEAEKGDCEFDHGGYFLIKGAEKIFIAQEQIFLKRLWVTTAPYWAVAYKSQMKRNRMVVKLVENSIVEGIKSGDKLLTVYFLSVEVPVWILFFALGVTSDKEVVDLIDYGLGDGRIENLLIASIREADEKCGAFRRGKNALLFLEEHIKGVKFPPSESIDECLDMYVFPNIKGLKRKARYLAYMVKVLLLAYNGRRKTDNRDDFRNKRLELAGELLEREIRVHFAHARKRLAKVLQRDLYGDRDVRQVEHYLDASIITNGLQRAFSTGAWTHPFKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLSVTGVVSTNVTESILPHLFDCGMEELVDDTTTVLGKKDKVFLNGEWVGVCSNSASFVSELRNRRRRKELPPQVEIKRDQIQEEVRILTDAGRILRPLLVVSNLLKIKESKSEHKSFQSLLDNGIIELIGPEEEEDFKTAWGVQYLFGKEGKSSVKYTHCELDMSFLLGLSCSMVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDALSHQLFYPQRPLFRTMASDCLGKPGYLGPSKVLPKSEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKAEIENKESSDKRKKPEDIVNFGKIQSKIGRVDSLDDDGFPFVGANLQSGDIIIGRCADAGTDHSIKLKHTERGYVQKVVLSSNDEGKNFATVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACVGSLKNATPFSTPSVEAITDQLHRAGFSRWGNERVYNGRTGEMVQSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASSNLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRFCESADDIVVASVPYGAKLLSQELFSMGINLKFDTEIC 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01458 1196 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 57 1190 IPR015712 GO:0003899|GO:0006351|GO:0032549
Vivi3g01458 1196 Gene3D - 407 592 - -
Vivi3g01458 1196 Gene3D - 59 240 - -
Vivi3g01458 1196 FunFam DNA-directed RNA polymerase subunit beta 407 595 - -
Vivi3g01458 1196 Pfam RNA polymerase Rpb2, domain 7 1095 1193 IPR007641 GO:0003677|GO:0003899|GO:0006351
Vivi3g01458 1196 Pfam RNA polymerase Rpb2, domain 6 724 1093 IPR007120 GO:0003677|GO:0003899|GO:0006351
Vivi3g01458 1196 Pfam RNA polymerase beta subunit 65 466 IPR007644 GO:0003677|GO:0003899|GO:0006351
Vivi3g01458 1196 FunFam DNA-directed RNA polymerase subunit beta 58 242 - -
Vivi3g01458 1196 Gene3D - 754 942 IPR014724 GO:0003899
Vivi3g01458 1196 Pfam RNA polymerase Rpb2, domain 5 668 714 IPR007647 GO:0006351
Vivi3g01458 1196 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 50 1193 - -
Vivi3g01458 1196 Gene3D - 724 1079 IPR037033 GO:0003677|GO:0003899|GO:0006351
Vivi3g01458 1196 Pfam RNA polymerase Rpb2, domain 4 592 652 IPR007646 GO:0003677|GO:0003899|GO:0006351
Vivi3g01458 1196 ProSitePatterns RNA polymerases beta chain signature. 946 958 IPR007121 GO:0003677|GO:0003899|GO:0006351
Vivi3g01458 1196 Pfam RNA polymerase Rpb2, domain 3 496 555 IPR007645 GO:0003677|GO:0003899|GO:0006351
Vivi3g01458 1196 FunFam DNA-directed RNA polymerase subunit beta 823 942 - -
Vivi3g01458 1196 Gene3D RNA polymerase Rpb2, domain 2 247 406 IPR037034 GO:0003677|GO:0003899|GO:0006351
Vivi3g01458 1196 CDD RNA_pol_B_RPB2 66 1192 IPR015712 GO:0003899|GO:0006351|GO:0032549
Vivi3g01458 1196 Pfam RNA polymerase Rpb2, domain 2 283 419 IPR007642 GO:0003677|GO:0003899|GO:0006351
Vivi3g01458 1196 Gene3D RNA polymerase alpha subunit dimerisation domain 1080 1194 - -
Vivi3g01458 1196 FunFam DNA-directed RNA polymerase subunit beta 1080 1194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01458 Vivi-Chr3 24167701 24174258 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01458 K16252 - gmx:100815934 1992.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01458 3 24167701 24174258 Vivi3g01458 3 24167701 24174258 ECH