Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01445 ATGTCGGATTTATCGAAGGATTTAGCGAAAGATTTATCGAAAGATGATTCGGTTCAAATCAGGGAGGTTTGGAACGATAATCTCGAAGAGGAATTCGCTTTGATCCGTGAAATTGTTGATGATTTCAACTATGTAGCTATGGATACAGAGTTTCCTGGCGTTGTTCTTCGTCCTGTAGGTGTTTTTAAGCATATCAATGATTTTAACTACCAGACTTTGAAGGATAACGTTGATATGTTGAAGCTGATTCAGTTAGGTTTAACTTTCTCTGATGAGAATGGGAAGTTGCCTACTTGTGGCACTGGGAATCCTTGCATCTGGCAGTTTAATTTCCGTGAATTTAACGTTAGCGAAGATATATTCGCGGCTGATTCGGTCGAGCTTTTGCATCAGTGTGGGATTGATTTCACGAAGAATAGTGAGAAAGGGATTGATGTGAACCGATTCGGGGAGCTTCTTATGTCGTCGGGGGTTGTGTTGAATGATAACATGCAATGGGTTACTTTTCACAGTGGATATGATTTTGGTTATCTGTTGAAGCTTTTGACTTGCAGAACTTTGCCGGATACGCAAGCGGGGTTCTTCGATTTGATCAACATTTATTTTCCGCTGCTGTATGATATCAAACACTTGATGAAATTCTGTAACAGTTTACATGGTGGGTTGAACAAGCTTGCGGAGTTGTTGGAAGTGGAGAGGATTGGTGTTTGCCATCAAGCGGGATCGGATAGTTTACTCACCGCTTGTGCATTTAGGAAATTGAGGGATACTTTCTTCAACGGCGATACGGAGAAATATTCTGGTGTGTTGTATGGATTAGGTGTTGAGACAGACTAA 837 0.411 MSDLSKDLAKDLSKDDSVQIREVWNDNLEEEFALIREIVDDFNYVAMDTEFPGVVLRPVGVFKHINDFNYQTLKDNVDMLKLIQLGLTFSDENGKLPTCGTGNPCIWQFNFREFNVSEDIFAADSVELLHQCGIDFTKNSEKGIDVNRFGELLMSSGVVLNDNMQWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPLLYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACAFRKLRDTFFNGDTEKYSGVLYGLGVETD 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01445 278 FunFam Putative CCR4-associated factor 1 7 10 277 - -
Vivi3g01445 278 Pfam CAF1 family ribonuclease 23 144 IPR006941 -
Vivi3g01445 278 Gene3D - 8 276 IPR036397 GO:0003676
Vivi3g01445 278 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 18 274 IPR039637 GO:0004535|GO:0030014
Vivi3g01445 278 SUPERFAMILY Ribonuclease H-like 20 273 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01445 Vivi-Chr3 23633303 23634927 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01445 K12581 - gmx:100785970 498.049