Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01420 ATGTACCGGGTAGCCAAAGCATCAGAATATCTTGTGATAACCGGAGCCGGAATCCAAGATATCAAACTTGCAAAGAAAGCATGGATTCTCCCCGGTCAATCTTGCACCGTCTTCGACCTTTCTCCGGTCAACTACACCTTCGAAGTTCAAGCTATGAGCGCCGAGAAGCTCCCTTTTGTTCTCCCCGCCGTCTTCACAATCGGTCCTCGTGCCGACGATCACGAAAGTCTCCTCAAATACGCCAAATTGATTTCACCACATGATAAGCTTTCCAATCATGTTAATGAACTCGTTCAAGGAATCATCGAAGGCGAGACGCGTGTTCTTGCTGCTTCGATGACGATGGAAGATGTTTTCAGAGGAACGAAAGAGTTTAAACAAGAAGTGTTTGCGAAAGTTCAACTTGAACTTAACCAGTTTGGGTTATTGATTTACAATGCAAATGTTAAACAGTTGGTTGATGTTCCAGGTCATGAGTATTTCTCATATTTAGGGCAAAAGACGCAGATGGAAGCGGCGAATCAAGCTAAGGTTGACATTGCGGAAGCTAGGATGAAAGGTGAGATTGGTTCGAAATTGAGGGAAGGACAAACGCTGCAGAATGCGGCGAAAATTGATGCGGAGACGAAGGTTATTGCCATGCAGAGAAGTGGAGAGGGTGAGAAGGAAGGAATTAAAGTGAGGAGTGAAGTGAAGGTTTTTGAGAATGCGAGAGAAGCTGAAGTGGCTCAGGCTAATTCTGAGTTGGCTAAGAAGAAAGCGGCCTGGAGTAAAGCGGCTCAAGTGGCTGAAGTGGAAGCTGCTAAAGCTGTGGCTCTTAGGGAAGCTGAGTTGCAAGGTGAGGTGGAGAGGATGAATGCTTTGACAACAACTGAGAAGCTTAAAGCTGAGTTTCTAAGTAAAGCCAGTGTTCAATATGAAACCAAGGTACAAGAAGCAAATTGGGAGCTGTACAAGAAACAAAAAGAGGCAGAAGCAATTCTGTATGAGAAGAAGACAGAGGCTGAAGCACAGAGAGCATTGGCAGATGCAACATTTTATGCTAGAAAGCAAGCAGCTGAAGCAGATCTATATGCAAAGAAAAAGGAGGCTGAGGGGATTATGGCACTTGGACAATCTCAAGGAGTGTATATAAGTACACTTCTGACTGCACTTGGAGGAAACTACGCTGCTCTAAGGGACTACTTGATGATAAATGGTGGCATGTTTCAAGAGATTGCAAAGATTAATGCTGAGGCAATTCGTGGACTTGAGCCTAAGATAAGTATATGGAGCAATGGTGGTGATAATGGTGGGGGAATAACAGAAGGTGGTATGAAAGATCTTGCTGGTGTGTACAAGATGTTGCCACCTCTGTTTAAGACTGTTCATGAGCAAACAGGAATGTTGCCTCCTTCTTGGATGGGAGCCTTGCCTGACAAAAGCACTTAA 1431 0.4458 MYRVAKASEYLVITGAGIQDIKLAKKAWILPGQSCTVFDLSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRADDHESLLKYAKLISPHDKLSNHVNELVQGIIEGETRVLAASMTMEDVFRGTKEFKQEVFAKVQLELNQFGLLIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQAKVDIAEARMKGEIGSKLREGQTLQNAAKIDAETKVIAMQRSGEGEKEGIKVRSEVKVFENAREAEVAQANSELAKKKAAWSKAAQVAEVEAAKAVALREAELQGEVERMNALTTTEKLKAEFLSKASVQYETKVQEANWELYKKQKEAEAILYEKKTEAEAQRALADATFYARKQAAEADLYAKKKEAEGIMALGQSQGVYISTLLTALGGNYAALRDYLMINGGMFQEIAKINAEAIRGLEPKISIWSNGGDNGGGITEGGMKDLAGVYKMLPPLFKTVHEQTGMLPPSWMGALPDKST 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01420 476 Pfam SPFH domain / Band 7 family 7 183 IPR001107 -
Vivi3g01420 476 PANTHER FLOTILLIN-RELATED 1 473 IPR027705 -
Vivi3g01420 476 SUPERFAMILY Band 7/SPFH domain 33 172 IPR036013 -
Vivi3g01420 476 Gene3D Band 7 domain 38 155 IPR036013 -
Vivi3g01420 476 CDD SPFH_flotillin 28 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01420 Vivi-Chr3 23041166 23043110 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01420 K07192 - dcr:108226889 754.592