Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01412 ATGGTAACTCTTAATTGTTTGCCTCCAACCGTGGAACCAAAAGTCTCTGAGCACATACCCCAAATCATTGATATGATTGAGAAGATTCTTAATAATGGGTATGCGTACAATGTTGACGGGGATGTATACTTTAATGTAGAAAAATTTCCAGAATATGGGAAATTATCTAGTCGAGGTCTAGAAGATAATCGTGCTGGTGAGAGGGTTGCTGTTGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTCTTTGGAAGTCTGTAAAGCCAGGAGAGCCATTTTGGGATAGTCCCTGGGGTCCTGGAAGACCTGGGTGGCACATTGAATGCAGTGCTATGAGTGCAGCTTATCTTGGTTACTCTTTTGACATCCACGGTGGAGGGATTGATCTTGTATTTCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCTTGTAGCAAAAGTGATATTAGTGTATGGATGCACAATGGTTTTGTCACCATTGACTCCGTGAAAATGTCTAAATCGCTGGGAAACTTTTTCACAATACGGCAGGTTGTAGATGTTTACCATCCACTGGCTTTGAGATATTTTTTGATGAGTGCTCATTACCGATCTCCCATGAACTACTCTAATATACACCTTGAAAGTGCTTCAGACCGTGTTTTTTATATATACGAGACATTACATGCATGTGAAAGCTTGCTGAACCAGCATGATCAGACAGTTAGGAAGGATTCCGTCCCATCAGATACTTTGAGTATTATTGATAACCTCTATAATGTTTTTCTGGCCTCAATGTCTGATGATCTTCACACTCCGGTTGTATTGGCTGGACTATCTGACCCACTTAAATTAATTAACGACTTGCTGAATACTCGCAAGGGGAAAAAACAACAATTTCGAATAGAATCACTTGCACTGTTGAAAAAAAGCATTGAGGATGTCCTTACTGTTATAGGACTTATGCCTTCAAGTTACGATGAGGTTTTGCAACAGCTTAAGGAAAAAGCTCTGAAGCGTGCAAACGTGACAGAAGATGAAATCCTGCAGAAGATTAAAGAACGGGATGCTGCTAGAATACAAAAAGAGTATGCCAAATCCGATGACGTAAGGAAAGAATTGGCTGTTCTTGGTATTGCTCTTATGGATAGTCCAAATGGCACGACTTGGAGGCCTACCATTCCTCTTCCGCTTCAAGAGCAGCTCTAG 1194 0.4087 MVTLNCLPPTVEPKVSEHIPQIIDMIEKILNNGYAYNVDGDVYFNVEKFPEYGKLSSRGLEDNRAGERVAVDSRKKNPADFALWKSVKPGEPFWDSPWGPGRPGWHIECSAMSAAYLGYSFDIHGGGIDLVFPHHENEIAQSCAACSKSDISVWMHNGFVTIDSVKMSKSLGNFFTIRQVVDVYHPLALRYFLMSAHYRSPMNYSNIHLESASDRVFYIYETLHACESLLNQHDQTVRKDSVPSDTLSIIDNLYNVFLASMSDDLHTPVVLAGLSDPLKLINDLLNTRKGKKQQFRIESLALLKKSIEDVLTVIGLMPSSYDEVLQQLKEKALKRANVTEDEILQKIKERDAARIQKEYAKSDDVRKELAVLGIALMDSPNGTTWRPTIPLPLQEQL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01412 397 Gene3D - 206 387 - -
Vivi3g01412 397 FunFam Cysteine-tRNA ligase-like protein 54 204 - -
Vivi3g01412 397 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 243 387 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vivi3g01412 397 PANTHER CYSTEINYL-TRNA SYNTHETASE 1 394 IPR024909 -
Vivi3g01412 397 Pfam tRNA synthetases class I (C) catalytic domain 1 212 IPR032678 -
Vivi3g01412 397 NCBIfam cysteine--tRNA ligase 1 386 IPR015803 GO:0004817|GO:0005524|GO:0006423
Vivi3g01412 397 PRINTS Cysteinyl-tRNA synthetase signature 91 109 IPR024909 -
Vivi3g01412 397 PRINTS Cysteinyl-tRNA synthetase signature 122 143 IPR024909 -
Vivi3g01412 397 FunFam Cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 205 387 - -
Vivi3g01412 397 Gene3D HUPs 1 205 IPR014729 -
Vivi3g01412 397 SUPERFAMILY Nucleotidylyl transferase 3 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01412 Vivi-Chr3 22985964 22989229 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01412 K01883 - gmx:100786700 726.087