Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01403 ATGAAACACACTTCATCCGAAGCAGTTCCTTCTCTATCATCCGCACCTTCCTTCACAGACCAATCACAGCCCGCCACGTCATCTTCATCTTCCGCCGCGGCGGCGGAGGACCTTACGATAGCCTCTCGCGACGGCGGAAGCGCTCAGGAGGCGGTGGTTGTGGATCGGAAAAACGAGTTCTCCGCTGTGTGTAGATGGACGGTGAACAATTTTCCCAAAGTGAAAGCTAGGGCACTGTGGAGCAAGTACTTTGAGGTAGGTGGTTACGATTGCCGTCTGTTGATATACCCTAAGGGTGATTCGCAGGCTTTGCCTGGTTATATTTCTGTTTATCTTCAAATCATGGACCCTCGCGGAACTTCTTCTTCGAAATGGGACTGTTTCGCGAGCTATCGTTTGGCATTTGTGAATGTTGTTGATGATTCGAAAACCGTTCATCGTGATTCTTGGCATAGGTTTACTGCTAAGAAGAAATCGCATGGTTGGTGTGATTTTACACCTGCTTCCACTATTTTTGATCCGAAATTGGGGTATTTGTTTAGTAATGATTCTGTGTTGATAACTGCTGATATTCTTATTCTTAATGAGTCTGTTAATTTTAGCCGGGATAATAATGAGGTGCAGTCTTCGGCTCTGTCTTCGTCGTCGTTGGTGTCGTCGTCGGTTGTTGCAGGTCCTATTTCTGATGTTTTGAGTGGGAAGTTCACGTGGAAGGTTCATAATTTTAGTTTGTTTAAGGATATGATTAAGACGCAGAAGATAATGAGTCCGGTTTTTCCTGCTGGGGAGTGTAATTTGAGGATTAGTGTGTATCAGAGTTTGGTGAATGGGGTTGATTATCTTTCGATGTGTTTGGAGAGTAAGGATACGGATAAGAATGTTGTGTTGTCTGATAGGAGTTGCTGGTGTTTGTTTAGGATGTCTGTTTTGAATCAGAAGCCTGCTACGAATCACATGCATAGGGATTCTTATGGTCGCTTTGCAGCGGATAACAAGAGTGGCGACAATACTAGCTTGGGTTGGAATGATTATATGAAGATGTCTGATTTTGTTGGGACGGATTCAGGGTTTCTGGTGGATGACACTGCTGTTTTTAGTACCTCGTTTCATGTGATCAAGGAGTTTAGCAGCTTCTCCAAGAATGGGGCTGTCATTGGTGGGAGAAGTGGAGGTGGTGCCAGGAAGTCAGATGGTCACATTGGAAAGTTCACTTGGAGGATTGAGAATTTCACAAGGTTGAAGGATTTACTGAAAAAGAGGAAAATTACGGGTCTTTGCATTAAGAGCAGGAGGTTTCAGATTGGTAATAGGGACTGTCGTCTTATTGTTTATCCCCGAGGGCAGTCTCAGCCACCGTGCCACCTTTCAGTGTTTCTTGAAGTTACGGATTCAAGAAATTCTTCAAGTGATTGGAGTTGTTTCGTTAATCATCGGTTGTCAGTTGTAAACCAGAAAATGGAGGACAAATCTGTCACCAAGGAATCTCAGAACCGTTACTCTAAAGCTGCCAAGGATTGGGGTTGGCGTGAATTTGTGACGCTTACTAGTCTATTTGATCAAGATTCAGGTTTTCTTGTCCAAGACACTGTCATTTTCTCAGCTGAAGTCCTTATATTGAAAGAGACATCAATAATGCAGGATTTTACTGAGCATGATTCTGAGTCAAACAGCAGTAGTTCCCTTCTTGATAGTACTGGGAAAAGAAGTTCATTTTCATGGAAAGTGGAGAATTTCCTTTCTTTTAAGGAAATAATGGAGACTCGAAAAATCTATAGTAAATTCTTTCAGGCTGGTGGATGTGAACTTCGAATTGGTGTGTATGAGTCGTTTGATACCATATGTATTTATTTGGAGAGTGACCAGGCTGTTGGTAGTGATCCTGATAAAAACTTCTGGGTCAGATACAGAATGGCTGTTGTGAATCAAAAAAATCCAGCCAAGACTGTATGGAAAGAATCTTCTATCTGCACAAAAACTTGGAATAATTCTGTATTGCAATTCATGAAGGTGTCAGATATGTTAGAAGCAGATGCAGGATTTCTTGTCCGTGACACCGTTGTTTTTGTGTGTGAAATATTGGATTGCTGCCCTTGGTTTGACTTTTCAGACTTAGAGGTTTTTGCCTCGGAAGATGATCAGGATGCGTTGACAACTGATCCCGATGAATTGATAGACTCTGAAGACAGTGAAGGGATAAGTGGAGATGAGGAAGATATTTTTAGAAATCTTCTTTCCAGAGCTGGATTTCATTTAACTTATGGAGATAATCCTTCACAGCCACAGGTTACTTTAAGAGAGAAACTTTTAATGGATGCTGGTGCAATTGCTGGGTTTCTGACTGGACTTCGGGTTTATCTTGATGATCCTGCAAAAGTAAAGCGCTTGCTTCTGCCTACGAAGCTTGCTGGTAGTTATGATGGGAAGAAGGCCACCAAGGCTGATGAGTCTTCCCCAAGTTTGATGAATTTGCTGATGGGAGTTAAAGTCTTACAGCAAGCAATCATTGATTTACTATTGGATATAATGGTGGAGTGCTGCCAGCCTTCTGAAGTGGGCCCTGCTGCTGATTCTGTTGATGAATGCTCAAAGCCTTTTCCAGAAAGCAGTGGAACTGCTAGTCCTCTTGAACGTGATAATGAAGATAGAGTAGTGGAGTCTGCACAAGTTCTTGTTAATGAGAGATTGAATTCTGCTGTCGAAGAAAGCAGTAGTACGTCTTCTGTACATAGTTTTGATTTAAATGGGAATGGTATTCAGGAAAAAACTCTTCCTGGACAGCCTACTTGTCCACCAGAAACGTGTGCCACTGTTTCAGAAAATGCGTCATTTCGGTCAAAGACCAAATGGCCAGAGCAGTCCGAGGAGCTCTTAGGTTTGATTGTAAACTCACTAAGAGCTTTGGATGGGGCCGTTCCACAAGGTTGTCCTGAGCCAAGACGGCGACCTCAGTCTGCGCAGAAAATTGCTCTTGTATTGGACAAGGCTCCTAAGCATTTGCAAGCAGATCTTGTTGCTTTGGTACCTAAATTGGTTGAGCAGTCAGAACACCCATTGGCTGCACATGCACTTCTTGAGCGCCTGCAACAGCCAGAAGCAGAACCTTCTTTGCGAATGCCTGTTTTTGGGGCTCTTAGTCAATTGGAATGTGGTAGTGAAGTGTGGGAGCGCATTCTATTTCAGTCATTTGAGCTTTTGACGGATTCAAATGACGAACCCCTGGTTGCAACAATAGATTTTGTATTCAAAGCAGCATCTCAATGTCAACACCTCCCCGAAGCAGTTAGGTCTGTTCGTGTCAGGCTGAAAAATTTAGGTCTTCATGTGTCGCCTTGTGTTCTTGACTTTTTGAGTAAGACAATAAATAGTTGGGGGGATGTAGCTGAAACCATACTGAGGGATATTGATTGTGATGAGGATTATGGTGAAAGTTGCACTGCTCTACCGTGTGGGATTTTCTTATTTGGTGAGCACAGCGGTGCTGCTACTGGACTGCACATGATTGATGAGCAGGCTTTTCGTGCTAGTCGTCATTTTTCTGATATTTATATACTGTTAGAAATGTTATCAATACCTTGTCTTGCTGTTGAAGCTTCTCAAACATTTGAGAGAGCTGTAGCACGAGGTGCAATAGGGGCTCAGTCTGTAGCCCTGGTATTGGAAAGTCTTCTTTCCCAAAAGTTGAACAATAATGCCAGAACCGAAAATTTTCAACATTCTGATGGTGGTGCAACAGAGGAGGATGCCATTGAGCAATTGGGAGTTCAAAGGGATGACATTACATTAGTTCTTGGTCTTGCTGAAACTTTGGCCCTCTCCAGGGACCTATGTGTGCAAGAATTTGTGAAACTGCTCTACGTGATAATCTTTAAATGGTATGCCAATGAATCTTACCGGGGGAGGATGCTGAAGACGCTTGTTGACCGTGTCACCAGCACTACTGATAATGGTCGTGAAGTAGATTTTGATTTGGATATCTTGGTTACTTTGGTCTGTGAGGAACAGGAGTATATTAGGCCTGTTTTGAGTATGATGCGGGGAGTTGCCGACCTTTCAAATATTGATCGAGCTGCCCTGTGGCACCAGTTATGTGCTAGTGAAGATGAAATTATCCGCGTTCGTGATGAAAGCAAAACTGAGATTTCTAATATGGCCAAGGAAAAAGCTATTCTATCACAAAAGCTGAGTGAATCCGAGGCCACAAATAGTCGTCTCAAGTCCGAAATGAAGGCCGAGGTAGATCGATTTTCTCGGGAAAAGAAGGAACTAGGAGAACAAATTCACGAAGTTGAGAGTCAGCTTGAATGGCATCGCTCAGAGCGGGATGATGAAATATTAAAGCTCTCTGCTGAGAATAAAGTTCTTCATGATCGTTTGCATGATGCAGAGACACAACTTTCTCAGTTGAAGTCTCGGAAACGTGATGAACTAAAGAAAATAGTAAAGGAGAAAAATACACTTGCTGAAAGATTGAAGAATGCTGAAGCTGCACGCAAGCATTTTGATGAAGAATTGAAAAGAATTGCAACAGAAAACGTGACTCGGGAAGAAATCCGCCAATCGCTGGAGGATGAAGTTCGTAGATTGACTCAAACAGTTGGACAAACCGAGGGAGAAAAACGGGAAAAGGAAGAGCAGGTTGCTAGGTGCGAAGCATATATTGATGACATGCAATCAAAGTTGCAGGCCTACCAGCAATATATCCTCAGTGCCGAGGCCTCACTCAAGGAGGAAATGTCGCGACATGCCCCATTATATGGTGCTGGTCTGGAGGCTCTATCAATGAAAGAGTTGGAAACAATATCACGGATTCATGAAGAGGGTCTGAGGCAGATCCACGCCCTTCAACAGCGTAAAGGTAGTCCGGCTGGGAGTCCGCATTTGAGTCCCCATACTCTCCCTCACAGCCATGGATTATATCCTTCTGCAACCGTAGGCCTTCCTCCCTCAATCATCCCAAATGGAGTAGGAATCCATAGCAACGGGCATGTGAATGGTGCAGTCGGACCCTGGTTTAACCACCCTTGA 5025 0.435 MKHTSSEAVPSLSSAPSFTDQSQPATSSSSSAAAAEDLTIASRDGGSAQEAVVVDRKNEFSAVCRWTVNNFPKVKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISVYLQIMDPRGTSSSKWDCFASYRLAFVNVVDDSKTVHRDSWHRFTAKKKSHGWCDFTPASTIFDPKLGYLFSNDSVLITADILILNESVNFSRDNNEVQSSALSSSSLVSSSVVAGPISDVLSGKFTWKVHNFSLFKDMIKTQKIMSPVFPAGECNLRISVYQSLVNGVDYLSMCLESKDTDKNVVLSDRSCWCLFRMSVLNQKPATNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFVGTDSGFLVDDTAVFSTSFHVIKEFSSFSKNGAVIGGRSGGGARKSDGHIGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNSSSDWSCFVNHRLSVVNQKMEDKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSIMQDFTEHDSESNSSSSLLDSTGKRSSFSWKVENFLSFKEIMETRKIYSKFFQAGGCELRIGVYESFDTICIYLESDQAVGSDPDKNFWVRYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLVRDTVVFVCEILDCCPWFDFSDLEVFASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLAGSYDGKKATKADESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEVGPAADSVDECSKPFPESSGTASPLERDNEDRVVESAQVLVNERLNSAVEESSSTSSVHSFDLNGNGIQEKTLPGQPTCPPETCATVSENASFRSKTKWPEQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKIALVLDKAPKHLQADLVALVPKLVEQSEHPLAAHALLERLQQPEAEPSLRMPVFGALSQLECGSEVWERILFQSFELLTDSNDEPLVATIDFVFKAASQCQHLPEAVRSVRVRLKNLGLHVSPCVLDFLSKTINSWGDVAETILRDIDCDEDYGESCTALPCGIFLFGEHSGAATGLHMIDEQAFRASRHFSDIYILLEMLSIPCLAVEASQTFERAVARGAIGAQSVALVLESLLSQKLNNNARTENFQHSDGGATEEDAIEQLGVQRDDITLVLGLAETLALSRDLCVQEFVKLLYVIIFKWYANESYRGRMLKTLVDRVTSTTDNGREVDFDLDILVTLVCEEQEYIRPVLSMMRGVADLSNIDRAALWHQLCASEDEIIRVRDESKTEISNMAKEKAILSQKLSESEATNSRLKSEMKAEVDRFSREKKELGEQIHEVESQLEWHRSERDDEILKLSAENKVLHDRLHDAETQLSQLKSRKRDELKKIVKEKNTLAERLKNAEAARKHFDEELKRIATENVTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDDMQSKLQAYQQYILSAEASLKEEMSRHAPLYGAGLEALSMKELETISRIHEEGLRQIHALQQRKGSPAGSPHLSPHTLPHSHGLYPSATVGLPPSIIPNGVGIHSNGHVNGAVGPWFNHP 1674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01403 1674 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 553 694 IPR008974 GO:0005515
Vivi3g01403 1674 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 393 545 IPR008974 GO:0005515
Vivi3g01403 1674 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 46 198 IPR008974 GO:0005515
Vivi3g01403 1674 ProSiteProfiles MATH/TRAF domain profile. 61 191 IPR002083 GO:0005515
Vivi3g01403 1674 Coils Coil 1444 1510 - -
Vivi3g01403 1674 SUPERFAMILY TRAF domain-like 569 693 - -
Vivi3g01403 1674 ProSiteProfiles MATH/TRAF domain profile. 400 536 IPR002083 GO:0005515
Vivi3g01403 1674 PANTHER TRAF-LIKE FAMILY PROTEIN 27 1673 - -
Vivi3g01403 1674 SMART math_3 63 171 IPR002083 GO:0005515
Vivi3g01403 1674 SMART math_3 237 350 IPR002083 GO:0005515
Vivi3g01403 1674 SMART math_3 405 517 IPR002083 GO:0005515
Vivi3g01403 1674 SMART math_3 573 673 IPR002083 GO:0005515
Vivi3g01403 1674 MobiDBLite consensus disorder prediction 1 33 - -
Vivi3g01403 1674 SUPERFAMILY TRAF domain-like 230 375 - -
Vivi3g01403 1674 Coils Coil 1387 1439 - -
Vivi3g01403 1674 CDD MATH 401 536 IPR002083 GO:0005515
Vivi3g01403 1674 MobiDBLite consensus disorder prediction 896 923 - -
Vivi3g01403 1674 MobiDBLite consensus disorder prediction 852 881 - -
Vivi3g01403 1674 CDD MATH 65 191 IPR002083 GO:0005515
Vivi3g01403 1674 CDD MATH 570 692 IPR002083 GO:0005515
Vivi3g01403 1674 ProSiteProfiles MATH/TRAF domain profile. 568 692 IPR002083 GO:0005515
Vivi3g01403 1674 Coils Coil 1518 1559 - -
Vivi3g01403 1674 ProSiteProfiles MATH/TRAF domain profile. 232 369 IPR002083 GO:0005515
Vivi3g01403 1674 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 231 383 IPR008974 GO:0005515
Vivi3g01403 1674 SUPERFAMILY TRAF domain-like 61 199 - -
Vivi3g01403 1674 MobiDBLite consensus disorder prediction 1614 1639 - -
Vivi3g01403 1674 Pfam MATH domain 581 688 IPR002083 GO:0005515
Vivi3g01403 1674 Pfam MATH domain 69 193 IPR002083 GO:0005515
Vivi3g01403 1674 Pfam MATH domain 432 538 IPR002083 GO:0005515
Vivi3g01403 1674 CDD MATH 233 365 IPR002083 GO:0005515
Vivi3g01403 1674 SUPERFAMILY TRAF domain-like 401 542 - -
Vivi3g01403 1674 MobiDBLite consensus disorder prediction 896 930 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01403 Vivi-Chr3 22870301 22879708 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01403 - - ccaj:109798115 2907.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01403 3 22870301 22879708 Vivi3g01403 3 22870301 22879708 ECH