Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01348 ATGGCTTCGAGTACGATTCGGAAAGCGATTGGTGCGGTGAAGGATCAGACGAGTATTGGAATAGCGAAGGTGGCGAGTAACATGGCGCCGGAGTTGGAGGTGGCGATTGTGAAGGCGACGAGTCACGACGAAGATCCGGCGAGTGAGAAGTATGTGAGGGAGATTTTGAACTTGATGTCTTACTCGCGTGGCTATGTGAACGCTTGTGTGTTGGCGGTGTCGAAGCGGTTGGGGAAGACGAGGGATTGGATTGTTGCGTTGAAGGCTTTGATACTTGTTCATCGTTTGATGAATGAAGGGACGGTGGTTTTTCAGGAGGAGATTTTGTATGCTACTAGGAGGGGGACTAGGCTTTTGAATATGTCGGATTTTAGAGATGAGGCGCATTCGAGTTCTTGGGATCACTCTGCTTTTGTTAGGACGTATGCGATGTATCTTGATCAGCGGCTTGAGTTGATGTTGTTTGATAGGAAGAGTGTTGGTGGTGGTAGTGGTGGTGGTTCTGGGAGTGGTGGTGGTGGGGATGATAGATTTGGTGGGAGGGAAAACTTCAGATCGCCGCCGAATGAATATGAGTATGGAGGTAGAGGGGATGGTGGGAGTGGAATGAGGAAGACGAGGTCGTATGGGGATATGGCTGATGCGTCGGGGCAGGATGATAGAAGGATTGTTACTGTTACTCCTTTGAGGGATATGAAGCCGGAGAGGATTTTCGGTAAGATGGGTCATTTGCAGAGGCTTTTGGATCGTTTCTTGTCTTGTAGGCCAACTGGGTTGGCTAAGAACAGCAGGATGGTTTTGGTTGCTTTGTATCCGCTAGTTAAGGAGAGCTTTCAGCTGTATGCGGATATATGTGAGGTTTTGGCTGTGTTGCTTGACAAATTCTTTGACATGGAGTATTCTGATTGCGTGAAGGCCTTTGACGCTTATGCAAGCTCAGCTAAGCAAATTGATGAACTGATTACCTTTTACAATTGGTGTAAAGATAGTGGTTTAGCAAGATCCTCAGAGTATCCAGAAGTTCAGAGAATTACTAGTAAGTTGCTGGAGACGCTTGAGGAGTTTGTGAGGGATAGGGCGAAGAGGCCTAAAAGTCCAGAGAGGAAAGAGGAAGCTCCCAAAGTGGAAGTACAAGAGGAGGAGCCGGTACCAGATATGAATGAAATCAAGGCACTGCCTGCCCCTGAGATTCATACCCCACCTCCTCCGCCTGTACCAGAGCCTGAACCAAAGCCACAGTTTACGGAAGACTTGATGAATCTGAGAGAGGATGCAGTCACTGCAGATGACCAGGGTAATAGATTTGCTTTGGCACTATTTGCTGGTGCACCGGCTAATAATGCCAATGGATCGTGGGAAGCCTTTCCATCAAATGGACAGCCAGAAGTAACTTCAGCTTGGCAAACCCCTGCTGCAGAACCTGGGAAAGCTGATTGGGAATTGGCACTGGTAGAGACAGCCAGCAATTTATCAAGGCAGAAAGCAGATTTAGGTGGTGGGCTAGACCCTTTATTGTTGAATGGTATGTATGATCAAGGAATGGTCAGGCAGCATGTCAGCACTTCCCAACTTACTGGAGGGAGTGCAAGCAGTGTGGCATTGCCGGGACCGGGAAAGACCACTACACCTGTTTTAGCTCTTCCGGCCCCAGATGGATCTGTGCAGCCAGTTAATCAGGACCCTTTTGCCGCATCTTTGAACATTCCACCTCCCTCCTATGTGCAAATGGCCGAAATGGAGAAGAAACAGCAATTGCTTGTGAATGAGCAGCAGCTGTGGCATCAGTATGCAAGGGACGGGATGCAAGGCCAAACTAGCTTGACGAAATTGAATGGTACTGGATACTATGGTGGAGGTCCTATGCCTTATGGAATGCCCCCGCCGGCCTATGGAATGGGACCTCCAAACGGGTATTACCATACTCCTCTCTGA 1932 0.4871 MASSTIRKAIGAVKDQTSIGIAKVASNMAPELEVAIVKATSHDEDPASEKYVREILNLMSYSRGYVNACVLAVSKRLGKTRDWIVALKALILVHRLMNEGTVVFQEEILYATRRGTRLLNMSDFRDEAHSSSWDHSAFVRTYAMYLDQRLELMLFDRKSVGGGSGGGSGSGGGGDDRFGGRENFRSPPNEYEYGGRGDGGSGMRKTRSYGDMADASGQDDRRIVTVTPLRDMKPERIFGKMGHLQRLLDRFLSCRPTGLAKNSRMVLVALYPLVKESFQLYADICEVLAVLLDKFFDMEYSDCVKAFDAYASSAKQIDELITFYNWCKDSGLARSSEYPEVQRITSKLLETLEEFVRDRAKRPKSPERKEEAPKVEVQEEEPVPDMNEIKALPAPEIHTPPPPPVPEPEPKPQFTEDLMNLREDAVTADDQGNRFALALFAGAPANNANGSWEAFPSNGQPEVTSAWQTPAAEPGKADWELALVETASNLSRQKADLGGGLDPLLLNGMYDQGMVRQHVSTSQLTGGSASSVALPGPGKTTTPVLALPAPDGSVQPVNQDPFAASLNIPPPSYVQMAEMEKKQQLLVNEQQLWHQYARDGMQGQTSLTKLNGTGYYGGGPMPYGMPPPAYGMGPPNGYYHTPL 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01348 643 MobiDBLite consensus disorder prediction 395 411 - -
Vivi3g01348 643 FunFam putative clathrin assembly protein At2g25430 224 368 - -
Vivi3g01348 643 FunFam Clathrin coat assembly protein 3 156 - -
Vivi3g01348 643 ProSiteProfiles ENTH domain profile. 24 160 IPR013809 -
Vivi3g01348 643 SUPERFAMILY ENTH/VHS domain 30 151 IPR008942 -
Vivi3g01348 643 MobiDBLite consensus disorder prediction 359 414 - -
Vivi3g01348 643 SMART enth_2 30 160 IPR013809 -
Vivi3g01348 643 Gene3D ANTH domain 221 370 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Vivi3g01348 643 PANTHER CLATHRIN ASSEMBLY PROTEIN 5 587 IPR045192 GO:0048268|GO:0072583
Vivi3g01348 643 Gene3D - 3 156 IPR008942 -
Vivi3g01348 643 MobiDBLite consensus disorder prediction 162 204 - -
Vivi3g01348 643 SUPERFAMILY GAT-like domain 228 358 - -
Vivi3g01348 643 MobiDBLite consensus disorder prediction 359 386 - -
Vivi3g01348 643 CDD ANTH_N_AP180_plant 32 152 - -
Vivi3g01348 643 Pfam ANTH domain 31 358 IPR011417 GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01348 Vivi-Chr3 21986468 21989365 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01348 - - gmx:100787076 1005.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01348 3 21986468 21989365 Vivi3g01348 3 21986468 21989365 ECH