Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01315 ATGAACAGACCAGGAGATTGGAACTGCAGGGCATGCAACCACCTCAACTTCCAGAGAAGAGAATCTTGCCAACGATGTGGTGAATCAAAGTCGATGTCTAGCGGCGGCGGAGGAGATTACGGTGTAGCCGCCTTCGGCGGTGGAAGAGGCTCTAGTTCGCCTTTTCCTTTCACCACTGGCCCAGATGTCCGCCCAGGTGACTGGTATTGTACTGTTGGTAACTGTGGAGCTCATAACTTTGCCAGCCGCTCTAGCTGCTTCAAATGTGGTGCTCCTAAGGATATTGATACCTTCTCCTCTGACTCCTCAGACATGCCAAGGCTATTGAGATCACCATACGGCTTTGGAGGCGGTGGTAGCGCAGGCGCCTCCACCCGCCCCGGATGGAAATCCGGTGACTGGATATGCACCAGGTCTGGTTGTAACGAGCATAACTTTGCGAATAGAATGGAGTGCTACCGATGCAATGGCCCGAGAGACCCTAGTTCCGGAAGGTCTTCCTATTTATCATGA 513 0.5283 MNRPGDWNCRACNHLNFQRRESCQRCGESKSMSSGGGGDYGVAAFGGGRGSSSPFPFTTGPDVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKDIDTFSSDSSDMPRLLRSPYGFGGGGSAGASTRPGWKSGDWICTRSGCNEHNFANRMECYRCNGPRDPSSGRSSYLS 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01315 170 ProSitePatterns Zinc finger RanBP2-type signature. 134 155 IPR001876 -
Vivi3g01315 170 ProSiteProfiles Zinc finger RanBP2 type profile. 130 161 IPR001876 -
Vivi3g01315 170 FunFam Ran-binding zinc finger protein 120 161 - -
Vivi3g01315 170 ProSiteProfiles Zinc finger RanBP2 type profile. 64 95 IPR001876 -
Vivi3g01315 170 PANTHER ZINC FINGER PROTEIN 61 162 - -
Vivi3g01315 170 Pfam Zn-finger in Ran binding protein and others 130 159 IPR001876 -
Vivi3g01315 170 Pfam Zn-finger in Ran binding protein and others 64 93 IPR001876 -
Vivi3g01315 170 ProSitePatterns Zinc finger RanBP2-type signature. 68 89 IPR001876 -
Vivi3g01315 170 SUPERFAMILY Ran binding protein zinc finger-like 2 32 IPR036443 -
Vivi3g01315 170 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Vivi3g01315 170 SUPERFAMILY Ran binding protein zinc finger-like 125 161 IPR036443 -
Vivi3g01315 170 SUPERFAMILY Ran binding protein zinc finger-like 60 96 IPR036443 -
Vivi3g01315 170 Gene3D - 2 32 - -
Vivi3g01315 170 Gene3D - 60 95 - -
Vivi3g01315 170 Gene3D - 124 161 - -
Vivi3g01315 170 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Vivi3g01315 170 FunFam Ran-binding zinc finger protein 58 95 - -
Vivi3g01315 170 SMART zf_4 5 29 IPR001876 -
Vivi3g01315 170 SMART zf_4 132 158 IPR001876 -
Vivi3g01315 170 SMART zf_4 66 92 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01315 Vivi-Chr3 21483556 21484834 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01315 - - vvo:131655138 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01315 3 21483556 21484834 Vivi3g01315 3 21483556 21484834 ECH