Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01288 ATGGGTACTGTTTCTGCTAGACACCCATTTGGAATCCATTTTCATTCCCATTCCCAATCCCTAATTCGCCGATTCGATTGCTCAATCTCCCAATTTCCTTCTCACGTAGACCTTTCCAGAATCACCTTGTATTCTTCTTCCCAGGGATTAGTTCACCGAGTATGTGCACGGCCTGATATTGATGATTTCTACTGGGAGAAAGAACCAACGCCCATTCTTGACACAATTGAAAGCCCTCTTTGCTTGAAGAACTTATCCCTTAGGGAGTTGAAACAACTCGCTGCTGAAATCCGTTTAGATTTGTATTCTGTTTTGTCAGGTACACAAATATCCCCAAATCCAAGTATGGCTGCGACGGAGCTGACAGTTGCAATGCATCATGTTTTCCATGCTCCAGTAGACAAGATATTGTGGGATGTTGGTGATCAAACATATGCACATAAAATGCTTACTGGAAGGAGATTACGTTTGAGGACAATCAGACAAAAGAATGGACTTTCTGGTTTTACTTCTCGGTTTGAGAGTGAATATGATTCATTTGGTGCAGGTCATGGATGCAACAGTATATCTGCCGGACTTGGCATGGCAGTTGCGAGGGATATTAAAGGAAGACGAGAACGTATAGTTGCAGTTATCAGCAATTGGACAACTATGTCTGGTCAGGTGTATGAGGCAATGGGAAATGCGGGATATTTGGACTCAAATATGGTGGTGATTTTGAATGATAGCCGCCACTCTTTACTCCCCAAAACTGAGGAGGGCTCAAAAACCTCTGTGAATGCCCTATCTAGTACCCTTAGCAGGCTCCAATCCAGTAAATCTTTCCGAAGGTTTAGAGAAGCTGCTAAGGGTGTTACAAAACGTATTGGCAGGGGCATGCATGAATTGGCAGCTAAAGTAGATGAATATGCTCGTGGTATGATGGGTCCCCTAGGTTCTACTCTATTTGAAGAGCTTGGGTTGTATTACATAGGGCCGGTGGATGGACACAATATTGAAGATCTCATATGTGTTCTTCAAGAAGTAGCTTCCTTGGATTCAATGGGTCCTGTCTTGGTTCATGTTATAACCGATGAAAATCAGGTTGGAGAACACAATAAGAAAAGTAATACAACAGACAAGCAGCAGGATGAATATGTTAGTTCTGATTTGTTCTACAATGCTGGTCAGCCTCAAACATATGGTGATTGCTTTGTGGAGTCTTTGGTTGCAGAAGCTGAGAAAGACAAAGATATTGTGGTTGTTCATGCAGGAATCACATCGGAACCATCACTTGAACTGTTTCGGGAAAAATTTCCAGATAGGATTTTCAATATGGGAGTTGCCGAGCAACATGCAGTCACGTTTGCTTCAGGGTTGTCATGTGGTGGATTGAAGCCATTTTGCATCATACCTTCTTCCTTTTTACAGAGAGCCTATGATCAGGTTGTTCATGATGTTGATCAACAGAAAATTCCAGTGCGTTTTGTCATTACAAGTGCAGGATTGGTAGGTTCGGATGGTCCCGTCCAGTGTGGAGCGTTTGATATAACGTTCATGTCGTGCTTACCAAACATGATTGTAATGGCACCGTCTGACGAGGTTGAACTTGTGAACATGGTGGCTACTGCTACTCACATCAATGACCGGCCAGTTTGCTTTCGGTATCCTAGAGGTGCCTTGGTTAATAAAGGCCACACTATAGATGATGGAGTCCCAATAGAGATTGGAAAGGGAAGAGTTCTTGTTGAAGGTAAAGATGTTGTCTTACTGGGATATGGATCAATGGTTCGTAACTGTCTAAATGCTCATTCTCTTCTTGCAAATCTTGGTGTTGAGGTGACTGTTGCTGATGCAAGGTTCTGCAAGCCCCTAGACATCAAGCTTCTGAGGCAGCTTTGTAAACACCATTCTTTTTTAGTTACCGTCGAGGAAGGATCTATTGGAGGATTTGGTTCTCATGTTGCTCAATTTATTGCTCTTGATGGACTTCTTGACCGGAGAATTAAGTGGCGCCCAATTGTCTTACCAGACAGTTACATTGAACATGCATCACCAAATCAACAGCTTGACAAAGCGGGGTTGACTGGACATCACATTGCTGCTACAGCGTTGAGTTTACTGGGCCGTACCCGTGAAGCTCTATCGTTTATGTGCTTTTGA 2142 0.4314 MGTVSARHPFGIHFHSHSQSLIRRFDCSISQFPSHVDLSRITLYSSSQGLVHRVCARPDIDDFYWEKEPTPILDTIESPLCLKNLSLRELKQLAAEIRLDLYSVLSGTQISPNPSMAATELTVAMHHVFHAPVDKILWDVGDQTYAHKMLTGRRLRLRTIRQKNGLSGFTSRFESEYDSFGAGHGCNSISAGLGMAVARDIKGRRERIVAVISNWTTMSGQVYEAMGNAGYLDSNMVVILNDSRHSLLPKTEEGSKTSVNALSSTLSRLQSSKSFRRFREAAKGVTKRIGRGMHELAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNIEDLICVLQEVASLDSMGPVLVHVITDENQVGEHNKKSNTTDKQQDEYVSSDLFYNAGQPQTYGDCFVESLVAEAEKDKDIVVVHAGITSEPSLELFREKFPDRIFNMGVAEQHAVTFASGLSCGGLKPFCIIPSSFLQRAYDQVVHDVDQQKIPVRFVITSAGLVGSDGPVQCGAFDITFMSCLPNMIVMAPSDEVELVNMVATATHINDRPVCFRYPRGALVNKGHTIDDGVPIEIGKGRVLVEGKDVVLLGYGSMVRNCLNAHSLLANLGVEVTVADARFCKPLDIKLLRQLCKHHSFLVTVEEGSIGGFGSHVAQFIALDGLLDRRIKWRPIVLPDSYIEHASPNQQLDKAGLTGHHIAATALSLLGRTREALSFMCF 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01288 713 SMART Transket_pyr_3 392 557 IPR005475 -
Vivi3g01288 713 SUPERFAMILY TK C-terminal domain-like 565 701 IPR009014 GO:0003824
Vivi3g01288 713 Gene3D - 570 701 IPR009014 GO:0003824
Vivi3g01288 713 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 390 580 IPR029061 -
Vivi3g01288 713 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 391 559 - -
Vivi3g01288 713 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 47 708 IPR005477 GO:0008661|GO:0016114
Vivi3g01288 713 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 72 702 IPR005477 GO:0008661|GO:0016114
Vivi3g01288 713 Gene3D - 64 361 - -
Vivi3g01288 713 Pfam Transketolase, C-terminal domain 570 693 IPR033248 -
Vivi3g01288 713 Pfam Transketolase, pyrimidine binding domain 393 554 IPR005475 -
Vivi3g01288 713 Gene3D - 392 561 - -
Vivi3g01288 713 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 570 702 - -
Vivi3g01288 713 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 75 699 IPR005477 GO:0008661|GO:0016114
Vivi3g01288 713 CDD TPP_DXS 113 357 IPR005477 GO:0008661|GO:0016114
Vivi3g01288 713 CDD TPP_PYR_DXS_TK_like 398 551 - -
Vivi3g01288 713 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 73 357 IPR005477 GO:0008661|GO:0016114
Vivi3g01288 713 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 70 453 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01288 Vivi-Chr3 21288867 21297271 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01288 430 652 Acyl Lipid Metabolism Gene Families AT3G13450 24.268 9.50e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01288 K01662 - gmx:100793268 1149.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01288 3 21288867 21297271 Vivi3g01288 3 21288867 21297271 ECH