Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01249 ATGCTAATGGTTGGAATGTCGAATAATTTGGTTTCGGAGCCTGTTACGAGCCGGCAGATGGCTCAATTGGAGCCTATTTTGAACAAGGTTGATTCGTCGGGACTCTTGCATCCTGTAGCCAGTGATTCCATGTCGCAGAATCAGGGAACTTCGAATGGTGAACCTAAGTCTCAAGGCTTACCGCTTTCTAACCAGCAGGGTGGCCGTGTAGAAATGCAGGCTGGAAATACGGGAGTGCATCGGATTCTTCCCCAGAAACAACCCGTGCAAATGGGGCCACGTCAACTGTCAGCTGCTCCTAAGCGGAAGGCAACAATTGAGCTGCCTTCTGGTAGCTTCATAACACCTAGTAAGCGGGAAAAACCAGCAGCTCACAGAACTTGGACACAGCAATCATCAAGCAGAGGCTCTCAACAGATGCAATCACCGACAAATGCTTCTAGAGCACAGCATTCGGCAGCATTTAGTAAGAGAAAAACACAAATGGAGTCTACCTCCAGCAAACCTGTGACGCCCCGGTCCTCAAATTCTAAGAGTCAGAGTGCACAGATGAAAGAATCCTCCAAGGTTCAAACTGAATCATCTGAGAGTGTTAGGTCCAAAATGAGAGAGTCATTAGCTGCTGCTTTGGCGTTGGTATCCCCGCAAGATAAATCTCTGGTCTCAAATGATGACAAACCAAATGATGCGGCCAATAGCTCTCACTGTGCTGAATCCGCATCTGCATCTGCCGACTCTGCTCCAGAACAAAAGCAGGAAATTTGTCAATCTGTTAATTCCTCTTTAGCTGTGGCTGATTCTGCTGGCCCTGTGATGGGTGAGCACATGAGTAATACATCTATTGGAGATTTTTCTGAAAAACCTAAGGACTATGAAGCGGGATTCACAAATGTGTTAAACAATGAAGATATGTTGAGTTCTGACAAGCAAGATTTCCAGTCTAACTACACTTTGACTACTGATGATCTTCCTTTCAGTGACAGTTTCTTTGTGAAAGACGACCTTTTGCAGGGAAATGGTCTTTCCTGGGTATTACCTGATATGGACCATATGATGGACATGGATGACCAAAGGGAAACTCAAACTATGATGGAGAAGAAATTGGAACCTGAGGTACCAGGTGGAGTTTGTAAGGCAGTGGTCCCTTTACCTGAACTTTTAGCATCAAGGATAGAAGCAGAGCTCTTCAAACTGTTTGGAGGTGTGAATAAGAAATACAAAGAGAAGGGAAGGTCTCTTTTGTTCAACTTGAAAGATCGCAATAATCCTGAACTCAGAGAAAGGGTTATGTTTGGTAAAATTCCTCCCGAACAGTTATGTTCCATGACTGCAGAGGAACTTGCTTCAAAGGAGCTTTCTGAGTGGCGGATAGCCAAGGCTGAGGAGTTTGCTCAAATGGTGGTTTTACCTGATTCAGATGTTGATATTAGACGCTTAGTCAGGAAGACGCATAAAGGTGAATTTCAAGTGGAAGTTGAACACGAAGACAATGTTCCAGTGGAAGAGGTGTCTGGTGGCAAAACTTCTGTTGTTCGAAGGCAACCAGTTAAAAAGGACGTGGAAGCCTCTTCTGCTTCTAAACCTGCCGGTGTAATCAAAAGAGATGTAAGCACTGACAATGAAAAGAGCAACTTACAAACGGACAATCAATTTTCCATTACCATTTCTTCCAATGACGGGACTGATCCAATGCAAGGGCTTATGACAGATGATGATGCATTGAAGGACCCCGACTTTCTTCCCCCAATTGTATCTCTTGATGAATTCATGGAATCCCTTGATTCTGAGCCACCATTTGATAATTTAGCCGCAGAGTCTGGAAAGGCATCTACCTCAGACAAGGATGTTTCTGGGGTTGGAACAAAATCAAAATCTTCAGATTTAATTCCAAGTGAGAAAGGTGATGCCAGTGCTAATAAGTCTGGTAAGCTTCAAAGCACAGATGCTGAGGAAGAAAAAAAAGTTAATGCTGAAGCTGGGTCCATTTTGTCTGATACAAAATACAGTGAAATTCGATCTGACACCAAGCTGGCTGATGGTCATACCAAGGAAATGTCAATTGATGGCCAAAAATCAACATCCAATAATGCTGAGTTAAGAGCTAGTCAGTTTCAAACAGAAGAGAGAGATGGCAAGGATAATGTGTCGAAAACTACAGTTCCCATTAAGGGTGAATGCCTTTGGGAGGGAATGCTTCAGCCAAACATCTCAACCACTGATTCAGTCATTAGCATCTTCAAAAGCGGCGAGAAAACTTCTACCAAAGACTGGCCTGGATTTCTCGAGATTAAGGGAAGGGTTCGGCTGGAACCGTTTGAAAAATTTCTGCAAGAGCTTCCACAGTCAAGAAGTCGTGCCATCATGGTTTCACATTTTATTTCTAAAGGGTCAACCCCTGAGGAGCAAGCAACTCTCCGTGAGGTGGCTGATTCTTATATTTTGGACGAGAGAGTGGGATTTGCAGAACCTGTGCCCGGAGTTGAACTTTACTTTTGCCCACCTCATAAGAAAACAGTTGAAATGCTCAGCAAGATACTTTCAAAGGAACAAATTGAGGCAGTTAATTCTATTGATAATGGTCTAATTGGTATTATTGTATGGAGAAAAACTAATATAACTACATCTATATCTCCCACTGCGCAATCACACAACAAACATAGCTCTAAAAGGCATAACTTGAGTAGAAGACAGCAAGATACTAATGCGAATGCCAATTCTACCCATAATGCTGTACCCTCTATGGGGTTTAAGACCACCGACAGTGGGGATGTTGATGGTGATGACGATGACGTTCCTCCTGGATTTGGGCCACCGGCTGCCCGAGTTGAGGATGACCTCCCGGAGTATAATTTTTCCAGTAGTTCAAATCCGTCACACTTGGTTCAAAAACCTATGGGACCAAGTACAGTCCCATCTCACTCGGTTGGTCAAACCCCTTCCCGTCCTGCACAACATATGAGAGAACTTGTACACAAATATGGGCAAAACCAAACACCTCCCGTATCTTCGGTAAACTGGCAGGACAAATTTAGGGGGTCAATTCAACCTTGGAATGATGATGACGACGACGATATACCTGAATGGCAACCAAATATGAATCAGAATCAGTTTACTCCCCAACAAACAGTGCATAATTTTAATCTTAGACCTCCCATTATGAATCAATCATTTGTGGGTTTACCCCAGCAACCAATTTTGCCGACTCAGTATCTGCAACCCCCAACGAATGTGGCACATGCCCAACCAAATTTTGTCCCTCAGTGGGTTCCCTCTATCCATGGTAATACCAATATACATCCAAGCAATGCACCACCACCACCCTATGGAACACCTACACAAGGAACTCCGTGGTCTCATCATGTTTCTAGAAGTAGAGGACTTTAG 3384 0.4379 MLMVGMSNNLVSEPVTSRQMAQLEPILNKVDSSGLLHPVASDSMSQNQGTSNGEPKSQGLPLSNQQGGRVEMQAGNTGVHRILPQKQPVQMGPRQLSAAPKRKATIELPSGSFITPSKREKPAAHRTWTQQSSSRGSQQMQSPTNASRAQHSAAFSKRKTQMESTSSKPVTPRSSNSKSQSAQMKESSKVQTESSESVRSKMRESLAAALALVSPQDKSLVSNDDKPNDAANSSHCAESASASADSAPEQKQEICQSVNSSLAVADSAGPVMGEHMSNTSIGDFSEKPKDYEAGFTNVLNNEDMLSSDKQDFQSNYTLTTDDLPFSDSFFVKDDLLQGNGLSWVLPDMDHMMDMDDQRETQTMMEKKLEPEVPGGVCKAVVPLPELLASRIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGKIPPEQLCSMTAEELASKELSEWRIAKAEEFAQMVVLPDSDVDIRRLVRKTHKGEFQVEVEHEDNVPVEEVSGGKTSVVRRQPVKKDVEASSASKPAGVIKRDVSTDNEKSNLQTDNQFSITISSNDGTDPMQGLMTDDDALKDPDFLPPIVSLDEFMESLDSEPPFDNLAAESGKASTSDKDVSGVGTKSKSSDLIPSEKGDASANKSGKLQSTDAEEEKKVNAEAGSILSDTKYSEIRSDTKLADGHTKEMSIDGQKSTSNNAELRASQFQTEERDGKDNVSKTTVPIKGECLWEGMLQPNISTTDSVISIFKSGEKTSTKDWPGFLEIKGRVRLEPFEKFLQELPQSRSRAIMVSHFISKGSTPEEQATLREVADSYILDERVGFAEPVPGVELYFCPPHKKTVEMLSKILSKEQIEAVNSIDNGLIGIIVWRKTNITTSISPTAQSHNKHSSKRHNLSRRQQDTNANANSTHNAVPSMGFKTTDSGDVDGDDDDVPPGFGPPAARVEDDLPEYNFSSSSNPSHLVQKPMGPSTVPSHSVGQTPSRPAQHMRELVHKYGQNQTPPVSSVNWQDKFRGSIQPWNDDDDDDIPEWQPNMNQNQFTPQQTVHNFNLRPPIMNQSFVGLPQQPILPTQYLQPPTNVAHAQPNFVPQWVPSIHGNTNIHPSNAPPPPYGTPTQGTPWSHHVSRSRGL 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01249 1127 MobiDBLite consensus disorder prediction 605 644 - -
Vivi3g01249 1127 MobiDBLite consensus disorder prediction 594 658 - -
Vivi3g01249 1127 SUPERFAMILY Elongation factor TFIIS domain 2 383 451 IPR036575 GO:0006351
Vivi3g01249 1127 MobiDBLite consensus disorder prediction 876 982 - -
Vivi3g01249 1127 MobiDBLite consensus disorder prediction 500 580 - -
Vivi3g01249 1127 Pfam Transcription factor S-II (TFIIS), central domain 383 462 IPR003618 GO:0006351
Vivi3g01249 1127 Gene3D - 356 450 IPR036575 GO:0006351
Vivi3g01249 1127 MobiDBLite consensus disorder prediction 897 916 - -
Vivi3g01249 1127 Pfam SPOC domain 725 867 IPR012921 -
Vivi3g01249 1127 MobiDBLite consensus disorder prediction 948 981 - -
Vivi3g01249 1127 MobiDBLite consensus disorder prediction 35 66 - -
Vivi3g01249 1127 SMART mid_6 355 458 IPR003618 GO:0006351
Vivi3g01249 1127 MobiDBLite consensus disorder prediction 81 202 - -
Vivi3g01249 1127 CDD SPOC_TFIIS 727 867 - -
Vivi3g01249 1127 MobiDBLite consensus disorder prediction 126 195 - -
Vivi3g01249 1127 ProSiteProfiles TFIIS central domain profile. 356 475 IPR003618 GO:0006351
Vivi3g01249 1127 MobiDBLite consensus disorder prediction 216 252 - -
Vivi3g01249 1127 MobiDBLite consensus disorder prediction 38 66 - -
Vivi3g01249 1127 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 109 952 - -
Vivi3g01249 1127 MobiDBLite consensus disorder prediction 1092 1127 - -
Vivi3g01249 1127 MobiDBLite consensus disorder prediction 542 564 - -
Vivi3g01249 1127 MobiDBLite consensus disorder prediction 214 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01249 Vivi-Chr3 20882920 20888818 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01249 - - gmx:100808809 1420.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01249 3 20882920 20888818 Vivi3g01249 3 20882920 20888818 ECH