Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01229 ATGCTAACCTTTCTGAGAACTCAAAACTTCACTATGCGTTGTGGTGTTGTTGTTGCTGTTGTTATCTTGTTCTTTAACGCGTTTTTAGTGTCTCGTGTGAGTGGAATCGGCGTAAACTGGGGTACTCAATGTACGCATCTTTTGTCACCGACCACGGTTGTGAGAATGCTGAAAGATAACGGGATTCAGAAGGTGAAGCTGTTTGATGCTGATCCCAATATCTTAGACGCGCTTAAGAAATCTGGTATTCAGGTTATGGTGGGGATTCCTAATGACATGCTTTATACTCTTGCTAATAGTCTTCAAGCTGCTGAAAGATGGGTTTCTAAGAATGTTTCTGCTCATGTTTCTTCTGGAGGTGTTGACATCAGATATGTTGCGGTGGGGAATGAACCATTTCTGTCAACATACAATGGCACTTTTGAAGCCACTACACTCCCAGCTCTGCAAAACATCCAGGCAGCTCTTACAAAAGCCGGTTTGAGTACTCGAGTCAAAGTTACTGTCCCATTAAACGCGGATGTGTATATAAGCGAAACAAGTAACCCATCCGACGGTGATTTCAGGCCGAATATCAACAACGTCATGCTGCAGATAGTCAAGTTCTTGAGTGACAACGGATCTCCTTTTACCGTAAACATATATCCTTTTATCAGTCTCTACTTGGATCCCAGCTTCCCCGTCGATTATGCTTTTTTCAATGGCTTTCAAGCTGCTATAAATGACAATGGAAAGATCTACGACAACGTGTTTGATGCTAACCATGATACACTAGTATGGGCACTGCAGAAACACGGGTTCGGAAACTTGCCTATAATTGTTGGGGAAATTGGGTGGCCAACCGATGGAGACAGAAATGCAAATCTTCAAAGTGCTCAACGCTTTAACCAAGGTTTTATGTCGAGGTATGTTTCCGGTAAGGGCACGCCGATGAGGCCTAATCCTATAGATGCCTACTTGTTTAGCTTCATAGATGAAGATAATAAGAGCATTCAGCCCGGGAACTTCGAACGCCATTGGGGGTTGTTTTACTTAGACGGACAGCCCAAGTACCAACTTAATCTCGGAACAGGCCGGGCGACTGGATTGGTGGGAGCTAGCGGCGTCCAACATTTGGAGAAAAAGTGGTGTGTGTTGAAACCATCAGCAAACCTCAATAGTGATCAATTGGCACCAAGTGTGTCATATGCCTGTCAAAATGCTGATTGTACAAGTCTTGGGTATGGAACATCATGTGGTAATTTGGATGTGAAAGGAAATATCTCTTATGCATTTAACAGCTACTACCAAGTGAATGACCAGATGGATAGTGCATGCAAATTTCCTGGACTTTCCATGATCACTGATAAAGATCCTTCATTTGGAACTTGCAAATTTAGAATCATGATTGAGACAGATTCTGCTGAGCTAAATGGTATGGTTGGATCAACAACAACAGTACTCCTTGCTTTGGTTGTTTTACTGTTGTGTAATGTTTCATTTTGA 1485 0.4263 MLTFLRTQNFTMRCGVVVAVVILFFNAFLVSRVSGIGVNWGTQCTHLLSPTTVVRMLKDNGIQKVKLFDADPNILDALKKSGIQVMVGIPNDMLYTLANSLQAAERWVSKNVSAHVSSGGVDIRYVAVGNEPFLSTYNGTFEATTLPALQNIQAALTKAGLSTRVKVTVPLNADVYISETSNPSDGDFRPNINNVMLQIVKFLSDNGSPFTVNIYPFISLYLDPSFPVDYAFFNGFQAAINDNGKIYDNVFDANHDTLVWALQKHGFGNLPIIVGEIGWPTDGDRNANLQSAQRFNQGFMSRYVSGKGTPMRPNPIDAYLFSFIDEDNKSIQPGNFERHWGLFYLDGQPKYQLNLGTGRATGLVGASGVQHLEKKWCVLKPSANLNSDQLAPSVSYACQNADCTSLGYGTSCGNLDVKGNISYAFNSYYQVNDQMDSACKFPGLSMITDKDPSFGTCKFRIMIETDSAELNGMVGSTTTVLLALVVLLLCNVSF 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01229 494 Gene3D - 371 468 - -
Vivi3g01229 494 ProSitePatterns Glycosyl hydrolases family 17 signature. 270 283 IPR000490 GO:0004553|GO:0005975
Vivi3g01229 494 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 25 448 IPR044965 GO:0004553|GO:0005975
Vivi3g01229 494 FunFam Glucan endo-1,3-beta-glucosidase 8 371 468 - -
Vivi3g01229 494 SUPERFAMILY (Trans)glycosidases 36 354 IPR017853 -
Vivi3g01229 494 Pfam Glycosyl hydrolases family 17 36 354 IPR000490 GO:0004553|GO:0005975
Vivi3g01229 494 SMART X8_cls 375 459 IPR012946 -
Vivi3g01229 494 Gene3D Glycosidases 35 361 - -
Vivi3g01229 494 FunFam Glucan endo-1,3-beta-glucosidase 5 35 361 - -
Vivi3g01229 494 Pfam X8 domain 375 445 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01229 Vivi-Chr3 20632968 20636137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01229 18 488 Glycoside Hydrolase AT4G31140 68.776 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01229 K19893 - gmx:100796552 827.78