Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01170 ATGAGTAGACCGATCACCCGGAGCAAAAATAAAAAACTAAAACAGGATGATGATGGTGTCTGCACTAGTGAAATTTGGAGGAAAATTCACGAAACCGGTGTGGTTACTGAGGATGATATTAATCAACTGTATATGATTTGTAAACCGGTTTGTTCCGGCTGCCGTGTCAATACGAAAGATAATCCGAATTGCTTTTGTGGATTGGTTCCGCCTTTAAATGGAGCTAGGAAGTCTGGTTTATGGGAGAAGGTGTCGGATTTCGTTGAAAGTCTTGGCCCTGATCCGAACAAGGATCTTCGTGCTTCTGATGATTCGCCTGCAGGTTTAACGAATCTAGGGGCAACGTGTTATGCGAATGGAATACTGCAGTGTTTGTACATGAATAAGTTATTCCGAGAAGGGATGTTTTCTGTGGAGCCGGATGTTTTAAGGCGACAACCGGTGTTAGATCAATTAGCGAGACTTTTTGCGCAGTTGCAAGGTAGTAAATTGGCTTTTGTAGATTCTTCTCCGTTTGTGAAGACGCTGGAGTTGGATAATGGAGTTCAGCAGGATAGCCATGAGTTTTTGACGTTGCTTCTGTCGTTGCTTGAGCGTTGTCTGAGTCATTCCAAAGTTCCGAAGGCTAGAACAATAGTTCAAGATCTTTTCCGCGGAAGTGTGTCTCATGTGACAACGTGCTCACAATGTGGAAGAGATTCTGAAGCTTCTTCCAAAACAGAAGATTTCTATGAGTTGGAGTTGAATGTCAAGGGATTGAAAAGTTTAGATGAGAGCCTGGATGATTACCTAACTGTTGAAGAGCTTCATGGAGACAATCAATATTTTTGTGAGTCATGCAACACAAGAGTTGATGCTACTCGCAGCATCAAGCTGTGTACCCTACCTGATGTACTTAATTTTCAACTTAAACGTTGTGTCTTTCTTCCAAAGACTACTACAAAAAAGAAAATTACTTCTGCATTTTCATTTCCTGTGCAACTTGATATGCGGCATAGACTGTATGAGTTATCTCAGTTTGATTTGGTGTATGACTTGTCAGCTGTACTGATTCACAAGGGATCCGGTGTTAATAGTGGCCATTACATCGCTCACATCAAGGACAAAAATACGGGGCAGTGGTGGGAATTTGATGATGAACACGTTACTAATTTAGGTAACCATCCATTTGGCGAAGGATCTTCTAGTTCTACTACTAAATCCGTTGCAACTGATGCAACTCGCTCTGACTGTTCTGAAGCAAGGATAGCTGAATGTAATGGAAACGGTTTAAACACCACTCATTCACAGTCTTCACTTATGGAAACATTTTCTTCTTGTGATGCTTACATGTTGATGTACCATCTTAAACATACAAAAAATATAAGTGAAAATGGGGGTATAGTTTGTGGAGCTAACCATAGAGAAATAGAAGGCGTTGTAGCTAGTGCACGAGACGATGTTTCTCTTCCTTCTCATCTTTATGATGAAATTCAAAATTTTAATGCCTCATATCTTGATGCTTGTCAACAATACAGTCATGGGAAAGAGTTAGAGCTGAATCGTATTACTGATAGGAGACAAGAAGTTCGATCTGTGTTGGCTGAAGCTCCTGTTCCACCTTTAGAGCGACCTTTTTATTGGATTTCTAGTGATTGGCTTCGCCAGTGGGCTGACAACATTATTCCAACTTCTATTGACAACACAGTCATCCAATGTTTACATGGGAAAGTCCCAGTTTCAAAGGTTACCTCAATAAAGCGACTGTCTGCCAAAGCATGGGATAAGTTGTTTTCCAAGTATGGTGGGATGCCAACACTGTCTCATGATGATCATTGTCGGGATTGTCTGATACACGGGGCTCAGACAGTGGTATCAGCTGACACCTATCGGGGTAGAAGAGAATCATTGAAGTCACTTGCACGGGATGTTCTTGATGGGAATTGTCCAGATGGAAAGTATTTCATATCCAGACCATGGTTGCAGCAGTGGTGGAAAAGAAAAGTCCTTGATGCTCCATCTGAAGCTGATGCTGGAATAACAGCGGCTATTAGTTGTCCACATGGTCTATTGATGCCTGAGCAAGCTCCTGGTGCTAAACGGGTGCTTATTCCTGAGACTTTTTGGCTCTTCTTATATGAAGATGCTATTTCTGTAAAACCTGATGATGCTTTAGGTGGCCTGATTCTTCCTTCAGGTTCTACAGAGTGTTCCCAATGCATTAATGAATTATCTGAAGCAGCATGCTTGGAGGATTCTTTGAGGTCAGTTAAACAAAAGCAGCGCCAGAATCATGAGAAATTATTCCATGCTAAAAGTATGCCTCTCTCTGCGGATTGTAAATATTTCTTGCTGCCTTCTTCATGGATTTCAAAATGGAGAAATTACATCAGTCCATCATTCAAGAATCCAGATATACCTGAAACTTTAGACGGGGTAATTGATTCACTGATGTGTGAAAAGCACTCTCAACTTGTTGAAAGACCTCCTCAACTGGTTTTCAGACGCGGTGCTATATTCCAGAGAGAATCTTCTGCAGGTGGCTTAACTATCATACCGGAGAATGATTGGATATGCTTTTGTGAAGAATGGGGTGGTACCAAGACCAAAGGGATATCGGCAACAATTGAGCATATTAATTATTCAGAGAACTTTTTGACTGGGTCCAGTGACAAGATGTTGGTATGCGAAGATCAGTTACAGACAGGGGATAAAGTGAAAAATGAAAATGGAACTGGAAGTGAACAAATTTTGATCAAGACTTGTCCCAAGGTTTGTGAAAGTTGCATTGGCGAAAAAGAAAGCTGTGAATTAATGCATAAACTTAACTATTGCAATGAGGACATAAGTGTAATTCTTGTACGTGGTAAGGAGGTACCTAAATCAATCTTGGAGGCCTCAAAGGGATTAACTGAAACAGATCGGCGGGTTTCCAAGCGCTCCCGGAAGACTAAAAATGGGAATTCAGCTAGTCTAAAAGTTTCTGCTTCAACATCACTATACCAGTTGAAGATGATGATATGGGAATCTTTTGGGGTTGTCAAGGAAAACCAGATACTACATAAAGCTGATAGGATAATTGATATTGAAGATGAGACTGCTACCCTTGCAGATGCAAATATATTTGCCGGAGATCAGATTATAGTGAGGGATTCTGAGATCCATGAGAATCGAGATATTGCTGATGAGCTCTGCAGTGATAAGATGGAACTTCAGCATACCGAGGAAGGTTTTCGTGGAACACTTCTTACAGCAAACATTTCATCCCAGGTTGTTTAA 3258 0.4104 MSRPITRSKNKKLKQDDDGVCTSEIWRKIHETGVVTEDDINQLYMICKPVCSGCRVNTKDNPNCFCGLVPPLNGARKSGLWEKVSDFVESLGPDPNKDLRASDDSPAGLTNLGATCYANGILQCLYMNKLFREGMFSVEPDVLRRQPVLDQLARLFAQLQGSKLAFVDSSPFVKTLELDNGVQQDSHEFLTLLLSLLERCLSHSKVPKARTIVQDLFRGSVSHVTTCSQCGRDSEASSKTEDFYELELNVKGLKSLDESLDDYLTVEELHGDNQYFCESCNTRVDATRSIKLCTLPDVLNFQLKRCVFLPKTTTKKKITSAFSFPVQLDMRHRLYELSQFDLVYDLSAVLIHKGSGVNSGHYIAHIKDKNTGQWWEFDDEHVTNLGNHPFGEGSSSSTTKSVATDATRSDCSEARIAECNGNGLNTTHSQSSLMETFSSCDAYMLMYHLKHTKNISENGGIVCGANHREIEGVVASARDDVSLPSHLYDEIQNFNASYLDACQQYSHGKELELNRITDRRQEVRSVLAEAPVPPLERPFYWISSDWLRQWADNIIPTSIDNTVIQCLHGKVPVSKVTSIKRLSAKAWDKLFSKYGGMPTLSHDDHCRDCLIHGAQTVVSADTYRGRRESLKSLARDVLDGNCPDGKYFISRPWLQQWWKRKVLDAPSEADAGITAAISCPHGLLMPEQAPGAKRVLIPETFWLFLYEDAISVKPDDALGGLILPSGSTECSQCINELSEAACLEDSLRSVKQKQRQNHEKLFHAKSMPLSADCKYFLLPSSWISKWRNYISPSFKNPDIPETLDGVIDSLMCEKHSQLVERPPQLVFRRGAIFQRESSAGGLTIIPENDWICFCEEWGGTKTKGISATIEHINYSENFLTGSSDKMLVCEDQLQTGDKVKNENGTGSEQILIKTCPKVCESCIGEKESCELMHKLNYCNEDISVILVRGKEVPKSILEASKGLTETDRRVSKRSRKTKNGNSASLKVSASTSLYQLKMMIWESFGVVKENQILHKADRIIDIEDETATLADANIFAGDQIIVRDSEIHENRDIADELCSDKMELQHTEEGFRGTLLTANISSQVV 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01170 1085 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Vivi3g01170 1085 ProSiteProfiles DUSP domain profile. 749 869 IPR006615 GO:0004843
Vivi3g01170 1085 ProSiteProfiles DUSP domain profile. 621 728 IPR006615 GO:0004843
Vivi3g01170 1085 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 74 449 - -
Vivi3g01170 1085 FunFam Ubiquitin carboxyl-terminal hydrolase 26 505 603 - -
Vivi3g01170 1085 SUPERFAMILY Ubiquitin-like 978 1044 IPR029071 -
Vivi3g01170 1085 Pfam Ubiquitin carboxyl-terminal hydrolase 108 447 IPR001394 GO:0004843|GO:0016579
Vivi3g01170 1085 Gene3D - 975 1050 - -
Vivi3g01170 1085 ProSiteProfiles DUSP domain profile. 514 606 IPR006615 GO:0004843
Vivi3g01170 1085 SMART dusp 532 608 IPR006615 GO:0004843
Vivi3g01170 1085 CDD Peptidase_C19L 108 447 IPR033841 GO:0004843
Vivi3g01170 1085 Gene3D Cysteine proteinases 93 450 - -
Vivi3g01170 1085 CDD Ubl_USP48 968 1076 IPR044743 GO:0004197|GO:0004843|GO:0016579
Vivi3g01170 1085 Gene3D - 744 865 IPR035927 -
Vivi3g01170 1085 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 450 IPR028889 -
Vivi3g01170 1085 SUPERFAMILY DUSP-like 518 606 IPR035927 -
Vivi3g01170 1085 SUPERFAMILY Cysteine proteinases 106 451 IPR038765 -
Vivi3g01170 1085 FunFam ubiquitin carboxyl-terminal hydrolase 48 94 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01170 Vivi-Chr3 19580376 19588927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01170 86 385 Miscellaneous Gene Families AT4G31670 28.483 3.27e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01170 - - gmx:100782778 1832.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01170 3 19580376 19588927 Vivi3g01170 3 19580376 19588927 ECH
Vivi3g01170 3 19580376 19588927 Vivi3g01170 3 19580376 19588927 PCT