Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01168 ATGGCCATTTCCCTCTTCACAATACTCCCATTTCTTTCCCCAACAACCACCAAATTCATTTCATCCAAATCATCTCTTTCATCACTTCTCACAAATCCAACAACACGATATCATTTCTCAACCATCACCATGAACTCCACCACCACCACTATCTCAGCAACATCTTCTTCCTCAATGCAGCACGTACCAGAGCAAGACTCTAACGAAATGGAACGTATCGCGAACCTAACATTTCAAAGATACACTTCCAATAGCACCAAGAGGAGTGGTAAAGGTACAGCAATAGTTTGGTTTAGAAACGATCTCAGAGTTTTGGATAATGAAGCTCTCTACAAAGCTTGGCTTTCTTCTCAAATTATCTTGCCTGTTTATTGTATCGATCCTCGACTCTTTGCCACCACTTACCACTTCGGATTTCAAAAAACCGGAGCATTGAGAGCACAGTTTGTACTAGAATGTTTGGCTGACTTGAGGAAGAATCTAATGAATCGGGGACTTAATTTGCTTATTCAACTTGGGAAGCCTGAGGATATTTTACCTTCTCTAGCTAAAGCTTATGGAGCTCATACAGTTTATGCACAGAAAGAAACTTGCAGTGAGGAGTTGAATGTTGAAAGGTCTGTCAGTAGATGTCTTCAGCAAGTGGTGGTACCATCTGATGAATCTGTTGGGGATGCAAGAACTTCAAATAGTCATCCTAAGTTACAGTTTGTTTGGGGAACCACCTTGTACCACCGAGATGATCTTCCGTTTGATGTCACTTGTTTGCCGGATGTTTATACTCAATTTCGTAAGACTGTCGAAGCCAAATGTGCTGTGCGCCCATCCATCAAACTGCCAACATCACTTGGACCACCTCCCCCTGTTGAGGATTGGGGACGTATTCCTTCAATGGAGCAGCTGGGACTTTGTTCACAGAATGTTAGCAAGGGGATGAAATTTGTGGGGGGTGAAACTGCCGGATTGAGCAGAATATATGACTACTTTTGGAAGAAGGATTTACTCAAGGTATACAAAGAAACCCGAAATGGGATGTTAGGGTCTGATTATTCTACTAAATTCTCACCATGGCTTGCATCAGGAAGCTTGTCACCTCGTCTCATACATGATGAGGTGAAGAGATATGAGAATGAAAGACAAGCAAATAGTTCTACCTACTGGGTTTTGTTCGAGTTGATATGGAGAGATTATTTTCGATTTCTATCTGTCAAATATGGAAATTCACTTTTCCATATAGGTGGACCGAGGAATGTTCAGCGTAATTGGAGCCAAGACAAGAAATTATTTGAATCCTGGAGAGATGGTTGTACAGGGTATCCTCTGATAGATGCTAACATGAAAGAACTATCAACTACAGGTTTCATGTCAAATCGTGGACGGCAGATTGTATGTTCCTTCCTAGTTCGTGACATGGGCATAGATTGGCGCATGGGCGCAGAATGGTTTGAGACGTGTCTTTTGGATTATGACCCTTGTTCTAATTATGGGAACTGGACTTACGGATCAGGAGTTGGGAATGATCCTCGGGAAGACCGGTATTTCAGCATACCGAAACAGGCACAAACATATGACCCGGAAGGTGAATATGTTGCGTACTGGTTGCCACAGTTACTAACAATTCCAAAAGAAAAAAGAAATTTTCCTGGTAGTTTATACATTCGTCAAATTGTGCCTCTCAAGTTTGGAACTACTGGGAGACAGAATAAGGAGGAGACTTCATTTGGTGGAGCAAGAAGAAGAAATGATCGAAGATGGAACAGGAATTAG 1767 0.4194 MAISLFTILPFLSPTTTKFISSKSSLSSLLTNPTTRYHFSTITMNSTTTTISATSSSSMQHVPEQDSNEMERIANLTFQRYTSNSTKRSGKGTAIVWFRNDLRVLDNEALYKAWLSSQIILPVYCIDPRLFATTYHFGFQKTGALRAQFVLECLADLRKNLMNRGLNLLIQLGKPEDILPSLAKAYGAHTVYAQKETCSEELNVERSVSRCLQQVVVPSDESVGDARTSNSHPKLQFVWGTTLYHRDDLPFDVTCLPDVYTQFRKTVEAKCAVRPSIKLPTSLGPPPPVEDWGRIPSMEQLGLCSQNVSKGMKFVGGETAGLSRIYDYFWKKDLLKVYKETRNGMLGSDYSTKFSPWLASGSLSPRLIHDEVKRYENERQANSSTYWVLFELIWRDYFRFLSVKYGNSLFHIGGPRNVQRNWSQDKKLFESWRDGCTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLLTIPKEKRNFPGSLYIRQIVPLKFGTTGRQNKEETSFGGARRRNDRRWNRN 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01168 588 Gene3D HUPs 56 240 IPR014729 -
Vivi3g01168 588 Gene3D - 241 410 - -
Vivi3g01168 588 MobiDBLite consensus disorder prediction 572 588 - -
Vivi3g01168 588 Pfam FAD binding domain of DNA photolyase 390 544 IPR005101 -
Vivi3g01168 588 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 411 565 - -
Vivi3g01168 588 NCBIfam DASH family cryptochrome 93 536 IPR014133 GO:0003913|GO:0006281
Vivi3g01168 588 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 312 545 IPR036134 -
Vivi3g01168 588 Pfam DNA photolyase 94 275 IPR006050 -
Vivi3g01168 588 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 91 290 IPR036155 -
Vivi3g01168 588 PANTHER CRYPTOCHROME 92 560 IPR002081 -
Vivi3g01168 588 PRINTS DNA photolyase signature 437 453 IPR002081 -
Vivi3g01168 588 PRINTS DNA photolyase signature 496 510 IPR002081 -
Vivi3g01168 588 PRINTS DNA photolyase signature 457 475 IPR002081 -
Vivi3g01168 588 MobiDBLite consensus disorder prediction 566 588 - -
Vivi3g01168 588 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 92 227 IPR006050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01168 Vivi-Chr3 19559549 19563222 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01168 K25656 - gmx:100783312 909.442