Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01123 ATGGATCTCAGTGGCAATTCTCTTCCGTCCGCACCTGACGGGGTAAAGAGAAGAGTATGCTATTTCTATGATCCAGAGGTTGGCAATTATTATTATGGCCAGGGTCATCCCATGAAGCCACATCGTATCCGAATGACACATGCCCTTCTTGCCCACTATGGATTGCTTCAGCACATGCAGGTCCACAAGCCTTTTCCTGCTAGAGACAGGGACCTTTGCCGTTTTCATGCGGATGATTATGTTTCATTTCTTCGAAGCATAACCCCTGAAACACAGCAGGATCATATGAGACAACTCAAACGCTTTAATGTTGGTGAAGATTGTCCTGTCTTTGATGGCCTATACTCTTTCTGTCAAACTTATGCTGGAGGTTCAGTTGGTGGGGCTGTCAAGTTGAACCATGCTCAATGTGATATTGCTGTCAACTGGGCTGGTGGCCTGCATCATGCCAAGAAGTGCGAGGCTTCTGGATTTTGCTATGTTAATGATATAGTCCTTGCAATCTTAGAACTTCTTAAAAACCACCAGCGTGTTCTATACGTGGACATTGATATCCACCATGGAGATGGTGTGGAGGAAGCTTTCTACACTACCGATAGAGTCATGACTGTGTCTTTCCATAAGTTTGGTGATTATTTTCCTGGTACCGGGGACTTGCGTGATATTGGATATGGAAAGGGGAAATACTACTCTCTTAATGTTCCACTTGATGATGGTATTGATGATGAGAGTTATCATTTGTTGTTTAAACCTTTAATCGGCAAAGTAATGGAACTCTTTAAGCCTGGTGCAGTAGTTCTCCAGTGTGGTGCAGACTCTTTATCAGGAGACAGGTTGGGATGTTTTAATCTTTCAATTAGAGGTCATGCAGAGTGTGTCAAATACATGAGATCGTTCAATGTTCCCCTCTTGCTACTAGGTGGTGGTGGCTACACCATCCGGAATGTTGCTCGCTGCTGGTGCTATGAGACAGGAGTTGCTCTTGGAATAGAAGTTGATGACAAAATGCCAGAGCATGAGTATTATGAATATTTCGGCCCAGACTATACTCTCCATGTTGCCCCAAGTAACATGGAAAACAAAAATACTCGACTTTTACTTGATAGTATCCGATCTAAGCTACTTGAGAATCTCTCAAAGCTGCAGCATGCTCCCAGTGTTCAATTTCAGGAAAGGCCTCCTGATTCTGATCTTGGAGAGGAAGTTGAAGATCATGATGATAGAGATGAGCGTTGGGATCCGGATTCTGACATGGACATTGATGTTGAACGCCATATTCTCCAAAGCAAAGTAAAAAGAGAAATTGTTGAACCTCAGCTCAATGATATGGAGGACCTGAAAAGAACTAGAGAGCAGTTGAGGGCCTCCGATACTGCAGTAGTTGAACCAAGCGTGAAGGCGTTAGATATTTGTTCTCAGCCAACTGATGAAGATAGTGTGAAAGATGAAGAGAATACTGCGAATGATTTGGCCAGAGAGATGGATCTCAAGTGA 1494 0.4351 MDLSGNSLPSAPDGVKRRVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVHKPFPARDRDLCRFHADDYVSFLRSITPETQQDHMRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHAQCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKNHQRVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDLRDIGYGKGKYYSLNVPLDDGIDDESYHLLFKPLIGKVMELFKPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVKYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPEHEYYEYFGPDYTLHVAPSNMENKNTRLLLDSIRSKLLENLSKLQHAPSVQFQERPPDSDLGEEVEDHDDRDERWDPDSDMDIDVERHILQSKVKREIVEPQLNDMEDLKRTREQLRASDTAVVEPSVKALDICSQPTDEDSVKDEENTANDLAREMDLK 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01123 497 PRINTS Histone deacetylase signature 164 180 IPR003084 GO:0004407|GO:0016575
Vivi3g01123 497 PRINTS Histone deacetylase signature 223 236 IPR003084 GO:0004407|GO:0016575
Vivi3g01123 497 PRINTS Histone deacetylase signature 71 89 IPR003084 GO:0004407|GO:0016575
Vivi3g01123 497 PRINTS Histone deacetylase signature 123 143 IPR003084 GO:0004407|GO:0016575
Vivi3g01123 497 PRINTS Histone deacetylase signature 240 258 IPR003084 GO:0004407|GO:0016575
Vivi3g01123 497 PRINTS Histone deacetylase signature 38 55 IPR003084 GO:0004407|GO:0016575
Vivi3g01123 497 PRINTS Histone deacetylase signature 102 119 IPR003084 GO:0004407|GO:0016575
Vivi3g01123 497 MobiDBLite consensus disorder prediction 471 497 - -
Vivi3g01123 497 PRINTS Histone deacetylase superfamily signature 145 168 IPR000286 -
Vivi3g01123 497 PRINTS Histone deacetylase superfamily signature 177 192 IPR000286 -
Vivi3g01123 497 PRINTS Histone deacetylase superfamily signature 262 272 IPR000286 -
Vivi3g01123 497 Pfam Histone deacetylase domain 36 324 IPR023801 -
Vivi3g01123 497 PANTHER HISTONE DEACETYLASE 2-RELATED 7 356 - -
Vivi3g01123 497 MobiDBLite consensus disorder prediction 384 417 - -
Vivi3g01123 497 PIRSF HDAC_I_euk 5 466 IPR003084 GO:0004407|GO:0016575
Vivi3g01123 497 FunFam Histone deacetylase 15 392 - -
Vivi3g01123 497 Gene3D Histone deacetylase domain 15 388 IPR037138 -
Vivi3g01123 497 MobiDBLite consensus disorder prediction 475 497 - -
Vivi3g01123 497 SUPERFAMILY Arginase/deacetylase 17 381 IPR023696 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01123 Vivi-Chr3 18727052 18735023 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01123 K06067 - gmx:100795375 928.702