Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01120 ATGGCGAAATTTTGGTGTGATTTTCGGTTACTTCTCTTAGTTGCTGCGGTCATCTTCATCTACATCCAGATTGAAGCTGAAAATCACTGTACAACTCAAATGCAATCGCTCATCGATCAGGTTAGCTCGCAGCAAGGACGCATTGTCGCCCTACAAGAAGAAAGGAAGCGTCGAGACCAAGAATGTGGGCAAATGAAGTCTCTTGTTCAAGATCTTGAAAGAAAAGAAGTAAGAAGACTGATCGATAAAGTGCAGGTTCCAGTGGCAGCTGTTGTAATCATGGCATGTAATCGTGCTGATTACCTGGAGAGGACTATCAATTCTGTGTTGAAATACCAAAGGGGCATTTCGTCAAGATTTCCTTTATTTGTATCTCAGGATGGATCAAATTCAGACGTCAAAAGTAAGGCTTTGAGCTATGATGAGCTATCTTATATGCAGCACTTAGATTTTGAATCGGTTCAAACTGAAAGGCCAGGAGAGTTAATTGCGTACTACAAGATTGCACGTCATTACAAGTGGGCTCTAGGTCAACTGTTCTACAAGCATAACTTCAGCCGAGTTATCATTCTTGAAGATGACATGGAAATAGCGCCTGATTTCTTTGATTACTTTGAAGCTATGGCAACTCTCCTTGACAAGGATAAGTCCATTATGGCTGTTTCATCATGGAATGACAATGGACAGAAGCAGTTTGTACATGATCCATATGAACTTTATCGCTCGGACTTCTTTCCTGGACTAGGATGGATGCTGGCTAGATCTACATGGGATGAACTGTCACCAAAATGGCCAAAGGCCTACTGGGATGATTGGTTGAGATTAAAAGAGAATCACAAAGGACGACAATTTATCAGACCTGAAGTATGCAGAACATATAATTTTGGAGAACATGGTTCTAGTCTGGGACAGTTTTTTAAGCAATATCTTGAGCCAATCAGGCTGAATGAGGTCCAGGTCAACTGGAAATCAATGGACTTGAGCTATTTGTTAGAGGACAAATATAATATACACTTCGCCAACTACATTAAAAAAGCTAAACCTGTCTCTGGAGCAGACATTGTTCAAAAGGCACACAACATAGCAGGTGATGTGCGTATTAAGTATAATGATCAGTGGGACTTTGAAAACATTGCTCAGCAATTCGGTGTATTTCAAGAGTGGAAGGATGGTGTGCCTAGGACAGCTTATAAAGGAGTGGTTGTTTTCAGATATCAAACCACTAGGCGTGTGTTTCTTATTGGTCCAGAATCCTTGAAGCTACTTGAGATTGAATATTTAGATTCTTAA 1290 0.4054 MAKFWCDFRLLLLVAAVIFIYIQIEAENHCTTQMQSLIDQVSSQQGRIVALQEERKRRDQECGQMKSLVQDLERKEVRRLIDKVQVPVAAVVIMACNRADYLERTINSVLKYQRGISSRFPLFVSQDGSNSDVKSKALSYDELSYMQHLDFESVQTERPGELIAYYKIARHYKWALGQLFYKHNFSRVIILEDDMEIAPDFFDYFEAMATLLDKDKSIMAVSSWNDNGQKQFVHDPYELYRSDFFPGLGWMLARSTWDELSPKWPKAYWDDWLRLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFKQYLEPIRLNEVQVNWKSMDLSYLLEDKYNIHFANYIKKAKPVSGADIVQKAHNIAGDVRIKYNDQWDFENIAQQFGVFQEWKDGVPRTAYKGVVVFRYQTTRRVFLIGPESLKLLEIEYLDS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01120 429 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 87 310 IPR029044 -
Vivi3g01120 429 FunFam Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase 349 422 - -
Vivi3g01120 429 Gene3D - 347 426 - -
Vivi3g01120 429 SUPERFAMILY Nucleotide-diphospho-sugar transferases 90 424 IPR029044 -
Vivi3g01120 429 Pfam GNT-I family 8 425 IPR004139 GO:0006486|GO:0008375
Vivi3g01120 429 CDD GT13_GLCNAC-TI 88 418 - -
Vivi3g01120 429 FunFam Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase 87 310 - -
Vivi3g01120 429 PANTHER PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1/ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE 24 420 - -
Vivi3g01120 429 Coils Coil 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01120 Vivi-Chr3 18709672 18723563 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01120 1 424 Glycosyltransferase AT4G38240 66.893 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01120 K00726 - gmx:100795005 770.77