Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01116 ATGAATGAAACGGTACTGCGGGAATGGTTCAATCGAGTTGACTCGGAGAATAGTGGAAGCATAACCGCGCTCCAACTCCAGTCAGCTCTAGGTAAGGGAAACCTGGAATTTTCCCTCTCAGTTGTTGAGCAGATGATCAGGATGTACGATTTTGACAGGAATGGTACCATGAGTTTTCAAGAATTCGTTGCTCTCAACAACTTCCTTCTTAAGGTTCAACATGCATTTTCTGATCTAGAAAGGGGTCGTGGTTTCCTTCTACCTGATGATGTCTTTCAGGCCGTAGTGAAAATTGGCTTCATGCTGGATTCTCCTGCTTTTTACTCTGTCTGTGAGAGCTTTGATCAAAGTAAAAATGGGAGGTTTCGGCTGGATGACTTCATATCACTCTGTATATTCTTACAATCAGCTCGGAATTTATTTACTTCATTCGATACCGCGAAACAGGGCAGAATTACTCTCGATCTGAATCAGTTTGTCTATTGTACTGCCAATTGTAGGATATGA 507 0.4221 MNETVLREWFNRVDSENSGSITALQLQSALGKGNLEFSLSVVEQMIRMYDFDRNGTMSFQEFVALNNFLLKVQHAFSDLERGRGFLLPDDVFQAVVKIGFMLDSPAFYSVCESFDQSKNGRFRLDDFISLCIFLQSARNLFTSFDTAKQGRITLDLNQFVYCTANCRI 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01116 168 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Vivi3g01116 168 Pfam EF-hand domain pair 4 64 IPR002048 GO:0005509
Vivi3g01116 168 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Vivi3g01116 168 PANTHER PEFLIN 3 166 - -
Vivi3g01116 168 SMART efh_1 5 33 IPR002048 GO:0005509
Vivi3g01116 168 SMART efh_1 41 69 IPR002048 GO:0005509
Vivi3g01116 168 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Vivi3g01116 168 Gene3D - 1 166 - -
Vivi3g01116 168 SUPERFAMILY EF-hand 5 164 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01116 Vivi-Chr3 18647699 18657855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01116 6 130 EF-hand Containing Proteins AT3G10660 27.273 9.10e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01116 - - tpra:123898571 310.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01116 3 18647699 18657855 Vivi3g01116 3 18647699 18657855 ECH