Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01113 ATGAGCAACTTAACAGTCCCGATAGTATTACTACTATTTATAGTTTCCTGCTGCTCAGCTGAGCAATGCGGAAGACAAGCTGGGGGTGCTTCATGCCCCGGCGGATTATGCTGCAGCAAATTTGGTTGGTGCGGTTCAGCCCCCGACTACTGCGGTGATGGTTGCCAGAGTCAGTGTAGTGGAGGCGGAGGCGGCGGCGGCGGTGGTGGTGGCGGCCTTTCTAGCCTCATCTCCAGTGACACCTTCAACAACATACTCAAACATCGCAACGATAATGCTTGTCAGGGAAAAGGCTTTTACACCTACAACGCTTTCCTTTCAGCCGCAAAGGCTTTCCCCAACTTCGCCAATAAAGGAGATACCGCCACTAAAAAGAGAGAAATCGCTGCTTTCTTAGGCCAAACTTCTCACGAAACCACCGGTGGATGGCCATCTGCACCTGATGGTCCTTACGCTTGGGGATACTGTTTTCTCAGAGAACAAAATCCCAGCGCCTACTGCCAACCAAGTTCTCAATTCCCATGTGCTTCTGGGAAACAATACTACGGCAGAGGTCCCATTCAGATCTCATGGAATTACAACTACGGACAGTGTGGAAGAGCGATTGGTGTTGACTTGCTCAATAATCCAGACCTCGTTGCTACTGATCCTGTTATATCCTTCAAAACCGCTTTATGGTTCTGGATGACACCTCAGTCACCTAAACCATCCTGCCATGATGTTATCACTGGAGGATGGAGTCCGTCAGGTGGTGATCGTGCTGCGGGGAGACTTCCGGGATACGGAGCTGTGACAAACATCATAAACGGAGGACTTGAATGCGGGAGAGGACAGGATGGTAGAGTGCAAGATCGAATCGGATTTTATAAGAGATATTGTGACATATTCGGAATTGGATACGGAGATAATCTTGACTGTTATTCTCAGAGGCCATTTGGATCTTCACTCTCATTATCATCAATCTTGCCCGACACCGTCGCAACAGCCTAG 990 0.4909 MSNLTVPIVLLLFIVSCCSAEQCGRQAGGASCPGGLCCSKFGWCGSAPDYCGDGCQSQCSGGGGGGGGGGGGLSSLISSDTFNNILKHRNDNACQGKGFYTYNAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPSAPDGPYAWGYCFLREQNPSAYCQPSSQFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWSPSGGDRAAGRLPGYGAVTNIINGGLECGRGQDGRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLSLSSILPDTVATA 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01113 329 CDD ChtBD1_GH19_hevein 21 60 - -
Vivi3g01113 329 SUPERFAMILY Plant lectins/antimicrobial peptides 22 60 IPR036861 GO:0008061
Vivi3g01113 329 CDD chitinase_GH19 77 306 - -
Vivi3g01113 329 PANTHER CHITINASE-RELATED 10 310 - -
Vivi3g01113 329 FunFam Endochitinase (Chitinase) 159 215 - -
Vivi3g01113 329 Pfam Chitin recognition protein 22 59 IPR001002 GO:0008061
Vivi3g01113 329 PIRSF Endochitinase 1 313 IPR016283 GO:0004568|GO:0005975
Vivi3g01113 329 Pfam Chitinase class I 76 306 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vivi3g01113 329 SUPERFAMILY Lysozyme-like 73 313 IPR023346 -
Vivi3g01113 329 ProSitePatterns Chitinases family 19 signature 1. 94 116 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vivi3g01113 329 ProSitePatterns Chitinases family 19 signature 2. 219 229 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vivi3g01113 329 Gene3D - 76 307 - -
Vivi3g01113 329 Gene3D Endochitinase, domain 2 159 215 - -
Vivi3g01113 329 ProSiteProfiles Chitin-binding type-1 domain profile. 20 61 IPR001002 GO:0008061
Vivi3g01113 329 SMART ChitinBD_3 22 59 IPR001002 GO:0008061
Vivi3g01113 329 ProSitePatterns Chitin recognition or binding domain signature. 32 51 IPR018371 GO:0008061
Vivi3g01113 329 Gene3D - 20 62 IPR036861 GO:0008061
Vivi3g01113 329 PRINTS Chitin-binding domain signature 30 38 IPR001002 GO:0008061
Vivi3g01113 329 PRINTS Chitin-binding domain signature 45 52 IPR001002 GO:0008061
Vivi3g01113 329 PRINTS Chitin-binding domain signature 38 45 IPR001002 GO:0008061
Vivi3g01113 329 FunFam Basic endochitinase 20 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01113 Vivi-Chr3 18593544 18594573 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01113 20 321 Glycoside Hydrolase AT3G12500 71.382 2.49e-157 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01113 K20547 - qsa:O6P43_002167 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01113 3 18593544 18594573 Vivi3g01113 3 18593544 18594573 ECH