Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01112 ATGAGCAAGTTAACAATCCAAATACTAGTAGTACTATTTATAGTCTCCTGCTGCTCAGCAGAGCAATGCGGAAGACAAGCTGGGGGTGCTTTATGCCCCGGTGGATTATGCTGCAGCAAATTTGGTTGGTGCGGTTCAACCTCCGACTACTGCGGTGATGGTTGCCAGAGTCAGTGTAGTGGAAGCAGCGGTGGTGGCGGCTCCCTTTCTAACCTCATCTCCAGTGACACCTTCAACAACATGCTCAAACATCGCAACGATAACGCATGTCAGGGAAAGGGCTTTTACACCTACGACGCTTTCCTTTCAGCCGCAAAGGCTTTCCCCGACTTCGCCAATAAAGGAGATACCGACACTAAAAAGAGAGAAATCGCTGCTTTCTTAGGCCAAACTTCTCACGAAACCACCGGTGGATGGCCATCTGCACCCGACGGTCCCTACGCTTGGGGTTACTGCTTTCTCAGAGAACAGAACCCCAGCGCCTACTGCCAACCAAGCTCTGAATATCCATGTGCTTCTGGGAAACAATACTACGGCAGAGGTCCCATTCAGATCTCATGGAATTACAACTACGGACAGTGTGGAAGAGCGATTGGTGTTGACTTGCTCAATAATCCAGACCTCGTTGCTACTGATCCTGTTATATCCTTCAAAACCGCTTTATGGTTCTGGATGACACCTCAGTCACCTAAACCATCCTGCCACGATGTTATCACCGGAGGATGGAGTCCGTCGAGTGGTGATCGTGCGGCGGGGAGACTTCCGGGATACGGAGCGGTGACAAATATCATAAACGGAGGACTTGAATGCGGAAGAGGACAGGATAGTAGAGTGCAGGATCGGATCGGATTTTATAAGAGATACTGTGACATATTTGGAATTGGATACGGAGATAATCTTGACTGTTATTCTCAGAGACCATTCGGATCTTCACTCTCATTATCATCAATCTTACTCGATACCATCGCAGCAACCTAG 978 0.4867 MSKLTIQILVVLFIVSCCSAEQCGRQAGGALCPGGLCCSKFGWCGSTSDYCGDGCQSQCSGSSGGGGSLSNLISSDTFNNMLKHRNDNACQGKGFYTYDAFLSAAKAFPDFANKGDTDTKKREIAAFLGQTSHETTGGWPSAPDGPYAWGYCFLREQNPSAYCQPSSEYPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWSPSSGDRAAGRLPGYGAVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLSLSSILLDTIAAT 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01112 325 Gene3D Endochitinase, domain 2 155 211 - -
Vivi3g01112 325 PRINTS Chitin-binding domain signature 38 45 IPR001002 GO:0008061
Vivi3g01112 325 PRINTS Chitin-binding domain signature 45 52 IPR001002 GO:0008061
Vivi3g01112 325 PRINTS Chitin-binding domain signature 30 38 IPR001002 GO:0008061
Vivi3g01112 325 Gene3D - 72 303 - -
Vivi3g01112 325 SUPERFAMILY Plant lectins/antimicrobial peptides 22 60 IPR036861 GO:0008061
Vivi3g01112 325 CDD ChtBD1_GH19_hevein 21 53 - -
Vivi3g01112 325 ProSiteProfiles Chitin-binding type-1 domain profile. 20 61 IPR001002 GO:0008061
Vivi3g01112 325 CDD chitinase_GH19 73 302 - -
Vivi3g01112 325 ProSitePatterns Chitinases family 19 signature 1. 90 112 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vivi3g01112 325 FunFam Basic endochitinase 20 61 - -
Vivi3g01112 325 SMART ChitinBD_3 22 59 IPR001002 GO:0008061
Vivi3g01112 325 FunFam Endochitinase (Chitinase) 155 211 - -
Vivi3g01112 325 Pfam Chitinase class I 72 302 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vivi3g01112 325 ProSitePatterns Chitin recognition or binding domain signature. 32 51 IPR018371 GO:0008061
Vivi3g01112 325 ProSitePatterns Chitinases family 19 signature 2. 215 225 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vivi3g01112 325 PIRSF Endochitinase 1 309 IPR016283 GO:0004568|GO:0005975
Vivi3g01112 325 Pfam Chitin recognition protein 22 59 IPR001002 GO:0008061
Vivi3g01112 325 SUPERFAMILY Lysozyme-like 69 309 IPR023346 -
Vivi3g01112 325 Gene3D - 20 62 IPR036861 GO:0008061
Vivi3g01112 325 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Vivi3g01112 325 PANTHER CHITINASE-RELATED 9 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01112 Vivi-Chr3 18582402 18583549 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01112 20 317 Glycoside Hydrolase AT3G12500 70.297 3.93e-159 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01112 K20547 - qsa:O6P43_002167 500.36