Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01111 ATGGAAGGTTTAGCAGTTCCACTCCCACGCCTCCTCCGCCCATTGCCGCTTCCAAAACATGCCATACCCATTTCTACTTCCAATTTCACCTCCACCTCCACCGGATTTATTTCTCTCAAACAACTCCAACTATCTCCTCGTCGTCGTCGTTTTCCCTTATCTACGCCATCATCGCATTCCCAGCCTCAAGGCGAACAACTCACCGTGGTTGCACCTGGGAATGATAATTCTGTCAGTGGAGATTCCATACGCCAAAGATTTCTAAATTTTTATGCCTCCCGTGCTCACAAGGTCCTTCCTAGTGCTTCTCTAGTCCCAGATGATCCCACTGTTCTTCTCACTATCGCTGGAATGCTTCAATTTAAGCCTATCTTCCTTGGAAAACTTCCTAGACAAGTCCCTCGTGCTACTACTGCACAAAGGTGCATTCGTACTAATGATATCAACAACGTCGGCCAAACCTCACGACATCATACCTTCTTTGAGATGCTTGGAAACTTTAGCTTTGGTGATTACTTTAAAACACAAGCTATTCAATGGGCATGGGACCTATCTACTGTTGAGTTTGGTTTGCCTCCAGAGAGATTATGGATTAGTGTTTATCAAGATGATGATGAAACTTTTCACTTCTGGTCTCAACAGGTTGGTGTCCCCGTTGAGCGAATAAAGAGGTTGGGCGAAGATGACAATTTTTGGACCAGTGGAGCCACAGGTCCATGTGGTCCATGCTCAGAAATTTATTATGATTTCCATCCTGAGAAGGGATATGATGATGCCGATCTTAATGATGATACACGGTTTATAGAGTTCTACAATCTAGTATTCATGCAATACAACAAAAAAGACGATGGTTCTCTTGAGCCACTAAAGCAGATGAACATAGATACTGGCCTCGGTCTCGAGCGCATGGCTCGCATTCTTCAAAAGGTTCCAAACAACTATGAAACTGACTTGATTCTCCCCATTATAGAGAAGGCATCTGAATTAGCTAATGTTTCATATGGAATTTCTGATGATCAGACCAAGAGGTATCTGAAAATTGTAGGAGATCACATGCGTGCAATTGTGTTTCTCATCTCTGATGGTGTTGTCCCATCAAATGTGGGGAGAGGTTATGTTGTTCGACGGCTTATTAGAAGGGTTGTTCGCACAAGCAGGTTGCTTGGTATAAAAGGTGATGGTAGAGGAGATCTTGAAGGAGCATTTTTACCTATTATTGCCGAGAAAGTAGTAGAATTAAGTACACACATAGATGCTGATGTGAAGAACAGAGCACCCCGTATCCTTGAGGAGTTGAAGAGAGAAGAGCTTCGATTTGTTCAGACGCTTGAAAGAGGAGAAAAGTTGCTTGAGGAGAAGCTTGCGGATGCTATATCAAGTGCTGAAAGAAATGGAACTGTACCTTGCTTGGCTGGTGAAGATGTGTTTATTTTGTACGATACTTATGGTTTCCCAATGGAAATAACAAAAGAAGTGGCTGAAGAACGTGGTGTGAGTATTGACATGAATGGTTTTGATATTGAGATGGAGAAGCAAAGGCGGCAGTCTCAAGCCGCACACAATACTGTCAAGCTTGCCATTGGAAGTGGGACAAGTATTGCAGACAATGTACCTGACACTGAATTTATTGGATATGATAGTCTTTATTGTAAAGCAATCATAGCAAGCCTAGTGGTAAATGGTGATCCAGCTGTACGTGTTAGTGAAGGGAGTAATGTAGAAATTTTGCTGAACAAGACTCCATTTTATGCTGAATCAGGAGGACAAATTGGAGATCATGGTTTTCTATATATTTCAGAGGGCGAGAATCAACCTAAAGCTGTTGTGGAGATAATTGATGTTCAGAAGTCTTTTGGTAATATATTTGTTCACAAGGGCACAGTCCATAAGGGTGTTGTAGAGGTTGGCAAACAAGTGGAGGCAACAGTAAATGTTAAGTTGAGGCAACGAGCTCAGGTTCATCATACTGCTACTCATTTACTACAAGCTGCACTTAAAAAAGTCATTGGTCAGGAAACCTCTCAAGCTGGTTCTTTGGTGGCTTTTGATCGTCTCAGGTTTGATTTCAACTTCCACCGTCCACTTCTTGACAGCGAGCTTGTAGAAATTGAAGTGCTAATCAACGGATGGGTTGAGGATGCGGTTCTCCTTCAGACCAAAGTGATGCCCATTGCTGATGCAAAAAGAGAAGGAGCAATTGCAATGTTTGGAGAAAAGTATGGTGAAGAGGTACGTGTTGTGGAGGTTCCTGGAGTATCGATGGAACTTTGTGGTGGAACTCATGTCAGTAATACCTCTGAAATTCGTGGTTTTAAAATAATTTCAGAGCAGGGTATTGCATCTGGTGTCAGGCGCATAGAAGCTGTAGCTGGGGAAGCTTTCATTGAATATGTCAATGCCCGGGATTCTTATCTGAAACAGTTATGTTCAACTCTCAAAGTGAAACCTGAAGAAGTAACTGCAAGGATAGAAAACCTTTTAGAGGAGTTACGGGCAGCAAGAAATGAAAACTCGACTGTGCGTGCAAAAGCAGCAGTCTACAAAGCTTCAGTTATTGCAAGCAAAGCGTTTCTCGTGGGGAATTCAAACCAGTACAGGATACTAGTTGAGTGCTTGGATGATGTTGATGCGGAGTCGCTTAAAAGTGCCGCTGAATATTTAATGGAAACGTTAGCAGATCCAGCTGCTATTGTCCTGGGGTCATGTCCGGGTGAAGGGAAGGTTAGTCTAGTGGCTGCTTTTACTCCAGGGGTGGTTAAGCAGGGGATTCAGGCAGGTAAATTTATCGGACAAATAGCAAAATTGTGTGGTGGCGGAGGAGGTGGAAGGCCTAATTTTGCTCAGGCTGGTGGGAGGAAGCCTGAAAATTTGGCTGCTGCCCTCGAGAAGGCTAAATCAGAGCTTATAGCTAATCTTAGTGAAAAAGGAAACTGA 2934 0.4315 MEGLAVPLPRLLRPLPLPKHAIPISTSNFTSTSTGFISLKQLQLSPRRRRFPLSTPSSHSQPQGEQLTVVAPGNDNSVSGDSIRQRFLNFYASRAHKVLPSASLVPDDPTVLLTIAGMLQFKPIFLGKLPRQVPRATTAQRCIRTNDINNVGQTSRHHTFFEMLGNFSFGDYFKTQAIQWAWDLSTVEFGLPPERLWISVYQDDDETFHFWSQQVGVPVERIKRLGEDDNFWTSGATGPCGPCSEIYYDFHPEKGYDDADLNDDTRFIEFYNLVFMQYNKKDDGSLEPLKQMNIDTGLGLERMARILQKVPNNYETDLILPIIEKASELANVSYGISDDQTKRYLKIVGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTSRLLGIKGDGRGDLEGAFLPIIAEKVVELSTHIDADVKNRAPRILEELKREELRFVQTLERGEKLLEEKLADAISSAERNGTVPCLAGEDVFILYDTYGFPMEITKEVAEERGVSIDMNGFDIEMEKQRRQSQAAHNTVKLAIGSGTSIADNVPDTEFIGYDSLYCKAIIASLVVNGDPAVRVSEGSNVEILLNKTPFYAESGGQIGDHGFLYISEGENQPKAVVEIIDVQKSFGNIFVHKGTVHKGVVEVGKQVEATVNVKLRQRAQVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDSELVEIEVLINGWVEDAVLLQTKVMPIADAKREGAIAMFGEKYGEEVRVVEVPGVSMELCGGTHVSNTSEIRGFKIISEQGIASGVRRIEAVAGEAFIEYVNARDSYLKQLCSTLKVKPEEVTARIENLLEELRAARNENSTVRAKAAVYKASVIASKAFLVGNSNQYRILVECLDDVDAESLKSAAEYLMETLADPAAIVLGSCPGEGKVSLVAAFTPGVVKQGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPENLAAALEKAKSELIANLSEKGN 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01111 977 Coils Coil 816 843 - -
Vivi3g01111 977 CDD AlaRS_core 81 310 - -
Vivi3g01111 977 Gene3D - 530 643 - -
Vivi3g01111 977 SUPERFAMILY Translation proteins 538 643 IPR009000 -
Vivi3g01111 977 Hamap Alanine--tRNA ligase [alaS]. 79 972 IPR023033 GO:0004813
Vivi3g01111 977 Gene3D Bira Bifunctional Protein; Domain 2 78 311 IPR045864 -
Vivi3g01111 977 FunFam Alanine--tRNA ligase 859 968 - -
Vivi3g01111 977 Gene3D - 715 768 - -
Vivi3g01111 977 PRINTS Alanyl-tRNA synthetase signature 370 383 IPR002318 GO:0000166|GO:0005737
Vivi3g01111 977 PRINTS Alanyl-tRNA synthetase signature 346 362 IPR002318 GO:0000166|GO:0005737
Vivi3g01111 977 PRINTS Alanyl-tRNA synthetase signature 146 157 IPR002318 GO:0000166|GO:0005737
Vivi3g01111 977 PRINTS Alanyl-tRNA synthetase signature 268 279 IPR002318 GO:0000166|GO:0005737
Vivi3g01111 977 PRINTS Alanyl-tRNA synthetase signature 295 308 IPR002318 GO:0000166|GO:0005737
Vivi3g01111 977 Pfam tRNA synthetases class II (A) 83 645 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Vivi3g01111 977 NCBIfam alanine--tRNA ligase 83 951 IPR002318 GO:0000166|GO:0005737
Vivi3g01111 977 SUPERFAMILY Class II aaRS and biotin synthetases 80 314 IPR045864 -
Vivi3g01111 977 Pfam DHHA1 domain 824 966 IPR003156 GO:0003676
Vivi3g01111 977 FunFam Alanine--tRNA ligase 715 768 - -
Vivi3g01111 977 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 315 523 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Vivi3g01111 977 FunFam Alanine--tRNA ligase 77 311 - -
Vivi3g01111 977 SUPERFAMILY ThrRS/AlaRS common domain 643 802 IPR018163 GO:0000166
Vivi3g01111 977 Gene3D - 654 789 - -
Vivi3g01111 977 FunFam Probable alanine--tRNA ligase, chloroplastic 529 643 - -
Vivi3g01111 977 Gene3D - 860 968 - -
Vivi3g01111 977 Hamap Probable alanine--tRNA ligase, chloroplastic. 63 974 IPR027522 GO:0009507
Vivi3g01111 977 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 78 800 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Vivi3g01111 977 PANTHER ALANYL-TRNA SYNTHETASE 75 967 - -
Vivi3g01111 977 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 744 787 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vivi3g01111 977 FunFam Alanine--tRNA ligase, cytoplasmic 644 801 - -
Vivi3g01111 977 Gene3D - 791 852 - -
Vivi3g01111 977 SMART tRNA_SAD_4 744 787 IPR012947 GO:0004812|GO:0005524|GO:0043039
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01111 Vivi-Chr3 18562863 18569704 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01111 K01872 - gmx:100788288 1591.63