Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01108 ATGTCTTGTTTATTGCCACACTTTAACACTTTCACAACTCCTATCCCCATCCCTACGCACCGCCATCATCATATCATTCTTCAAATTAAATTAAGACGCAATTTCTATTTACGCCCACACTGTATTCTGTCTCCCTCCGCACCATCAACCGCACTCCTTGAATTCGATAATCATAAATTCGATGCTTGGCCCTATGTCACTTCTCAGGAAAACTTTAAAGCAGCCTCTTCTGCAGAATCACTTCTTACTAGTGAAGACGCGGTAATAACCGCCGCTGCTTCTGAAGCTCTTGCTCTTGCCAAAGCTGCTGCAAAACTTGCAAAGGATGCAGCTCTATTAGTGAAAGACAATCCCCCACAACAACAACCTGTGTTGAGGCCACAACTTCCTTCCACGCCTGAAAATTTACTTCTCAAATGGGTTCAACATATGGAAGCACAAGATGCTGTAGCAGAAGGATCCGTGGTCACTGGACCGGAAACAACGGAAGAGTTTGATCAAGAGGAGCCTACCATTGAGGAACTTGAAGACGTCGAGGAAGAATTGTCTAATAGTATAGATGCAAGATCTGGCCGCCTTACGGAAAGAAAAGCTAGAAGAGTCAGAGCATCTGGGAAGGCTGCTACCAATATTGTGTCCTTTAAGTCTGGATCCACCAGTAGAAAGAAGCGTGTTCGGACACAAGAGATTGACTATTCTGATCCACTGCGTTACTTAAGAAGTACAACCAAATCTACAAAGCTTCTTACTTCATCTGAAGAAGTTAAGTTGTCTGCAGGAATACAGGATCTGATAACGCTCGAAAAACTTCAAAAGGATCTTGTAGAAAAATATGGTGGCGAGCCCACATTTTCTCAATGGGCTACAACGGCAGGGGTAGATCAGAAGACCCTGAGAAAACGATTAAATTATGGTGTACATTGCAAAGAAAGAATGATTAAAAGCAATATACGACTTGTCATATCAGTTGCTAAGAATTACCAGGGATTAGGAATGAGTCTGCAAGATGTAGTCCAGGAAGGATGCCGCGGCCTTGTAAGAAGTACAGAGAGGTATGATGCTTCTAAGGGCTTTAAGTTCTCAACCTATGCTCACTGGTGGATTAGACAGGCAATTCGGAAAGCCCTTTCTCTCCAGTCAAGAGTTATTCGCTTACCACTCCACATAGTGGGAGCAGCTTACAAAGTGAGGGAGGCAAAGAAAAAACTGTACAGTGAAAATGGAAGACAACCAACCGATCAAGAAGTTGTTGAAGCAACTGGGCTGTCAATGAAGATGCTTAATGCTGTTTATATGGTCCCAAAAGCTCCGAGATCACTAGATCAGAAAATTGGGATCAACCAGACTCTTAAGCCTTCAGATGTACTTGCCGATCCAGAAGCTGAAACAGCCGAAGAACAGCTGATTAAGCAGTTCATGAAAAAGGACCTAGAAAAGGTACTAGACAGCCTGAAACCGAGAGAGAAACAAGTGATTAGATGGAGATATGGTATGGATGATGGAAGGATGAAGTCACTGCAAGAGATTGGGGAAATGATGGGCGTGACTAGGGAGAGAGTTAGACAACTTGAGTCACGTGCTTTTAGGAAGCTTAAGAACAAGAAGAGAGCCAAACATTTGCAGCAGTATATGAATATATAA 1641 0.4302 MSCLLPHFNTFTTPIPIPTHRHHHIILQIKLRRNFYLRPHCILSPSAPSTALLEFDNHKFDAWPYVTSQENFKAASSAESLLTSEDAVITAAASEALALAKAAAKLAKDAALLVKDNPPQQQPVLRPQLPSTPENLLLKWVQHMEAQDAVAEGSVVTGPETTEEFDQEEPTIEELEDVEEELSNSIDARSGRLTERKARRVRASGKAATNIVSFKSGSTSRKKRVRTQEIDYSDPLRYLRSTTKSTKLLTSSEEVKLSAGIQDLITLEKLQKDLVEKYGGEPTFSQWATTAGVDQKTLRKRLNYGVHCKERMIKSNIRLVISVAKNYQGLGMSLQDVVQEGCRGLVRSTERYDASKGFKFSTYAHWWIRQAIRKALSLQSRVIRLPLHIVGAAYKVREAKKKLYSENGRQPTDQEVVEATGLSMKMLNAVYMVPKAPRSLDQKIGINQTLKPSDVLADPEAETAEEQLIKQFMKKDLEKVLDSLKPREKQVIRWRYGMDDGRMKSLQEIGEMMGVTRERVRQLESRAFRKLKNKKRAKHLQQYMNI 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01108 546 Pfam Sigma-70 region 2 312 381 IPR007627 GO:0003700|GO:0006352|GO:0006355
Vivi3g01108 546 Gene3D - 385 462 IPR036388 -
Vivi3g01108 546 MobiDBLite consensus disorder prediction 162 181 - -
Vivi3g01108 546 Gene3D RNA Polymerase Primary Sigma Factor 134 384 - -
Vivi3g01108 546 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 444 544 IPR013324 -
Vivi3g01108 546 NCBIfam sigma-70 family RNA polymerase sigma factor 310 534 IPR014284 GO:0003700|GO:0006352|GO:0006355
Vivi3g01108 546 Gene3D - 466 546 IPR036388 -
Vivi3g01108 546 PRINTS Major sigma-70 factor signature 360 368 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi3g01108 546 PRINTS Major sigma-70 factor signature 484 496 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi3g01108 546 PRINTS Major sigma-70 factor signature 520 531 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi3g01108 546 PRINTS Major sigma-70 factor signature 336 349 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi3g01108 546 PRINTS Major sigma-70 factor signature 505 520 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi3g01108 546 Pfam Sigma-70, region 4 480 532 IPR007630 GO:0003700|GO:0006352|GO:0006355
Vivi3g01108 546 ProSitePatterns Sigma-70 factors family signature 2. 505 531 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi3g01108 546 MobiDBLite consensus disorder prediction 153 184 - -
Vivi3g01108 546 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 380 426 IPR013324 -
Vivi3g01108 546 CDD Sigma70_r4 474 532 - -
Vivi3g01108 546 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 233 381 IPR013325 GO:0003700|GO:0006352|GO:0006355
Vivi3g01108 546 Pfam Sigma-70 region 3 394 467 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vivi3g01108 546 PIRSF Sigma_factor_SigC 11 546 IPR016262 -
Vivi3g01108 546 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 82 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01108 Vivi-Chr3 18532330 18536618 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01108 - - aprc:113864822 651.744