Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01107 ATGAGAAAGACGAAGAAGAGCAGCAGTACTACTTCAGATTCAGACTATTGTCAACAACAACCTTTAACTACTACTGCTGCTGCTGCTGAAGAAGAAACAACTCCTCCTCCTCCTAAGCTTGACGATGGTTTCTATGAAATTGAAAGGATTCGCCGTAAGAGGATCCGAAAGGGTGAGCTCCAGTACCTCATTAAATGGCGTGGGTGGCCCGAAACTGCTAACACTTGGGAGCCTCTTCAAAATCTACAATCTGTTCCGGATCTCATTCATGCATTTGAAGAAAGCCTCAAATCTAGTGCTGCCACTGGAGGTGGAAAACATCATCATCGCAGCAAGGGGAAACGCACCACCACTCTTCCACCTCCCCCTCAACCACCACAACCTCCCACCGTGTCTACCGACTCTGCCCTCCATGCAGACAACAACCTAGCACCACATTTCCAACAAACTGTCATTTCAACGCCTGACAATGCTCAATCCAACGGGGATCCGCTTCAAACTGACCGCACCAGAGGAGCCAAAAGGAGAAAACCTGCTTCCGTTAAGAGGTTCAAGAAAGAGGAATGTGCATCTCAAACTATTGATGCAAACAATGCAGCTGCTAATGATGTCTCTGCTGCTGGTAAGCCTGAACCGGCCTGGACACAAAATGCATGCAATATTGTCAAGATTCTAAAGCCAATAGGCTATTCCGCTTCTCTGTCTTCCTACATGCAGGATGTTTCAGTCACCTTTATGGCTATGAGGTCTGATGGAACAGAAGTGATGGTGGATAACAAATATCTCAAGACAAGCAATCCTCTTCTGCTTATCAATTTCTATGAGCAGCATCTCCGATACAATCCAAGTTCTTAA 855 0.4608 MRKTKKSSSTTSDSDYCQQQPLTTTAAAAEEETTPPPPKLDDGFYEIERIRRKRIRKGELQYLIKWRGWPETANTWEPLQNLQSVPDLIHAFEESLKSSAATGGGKHHHRSKGKRTTTLPPPPQPPQPPTVSTDSALHADNNLAPHFQQTVISTPDNAQSNGDPLQTDRTRGAKRRKPASVKRFKKEECASQTIDANNAAANDVSAAGKPEPAWTQNACNIVKILKPIGYSASLSSYMQDVSVTFMAMRSDGTEVMVDNKYLKTSNPLLLINFYEQHLRYNPSS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01107 284 SMART ChS_2 209 283 IPR008251 GO:0005634
Vivi3g01107 284 PRINTS Chromodomain signature 42 50 IPR017984 -
Vivi3g01107 284 PRINTS Chromodomain signature 55 69 IPR017984 -
Vivi3g01107 284 PRINTS Chromodomain signature 70 82 IPR017984 -
Vivi3g01107 284 MobiDBLite consensus disorder prediction 98 137 - -
Vivi3g01107 284 MobiDBLite consensus disorder prediction 152 167 - -
Vivi3g01107 284 Gene3D - 26 97 - -
Vivi3g01107 284 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 158 283 IPR044251 GO:0006325|GO:0031507
Vivi3g01107 284 MobiDBLite consensus disorder prediction 1 44 - -
Vivi3g01107 284 ProSitePatterns Chromo domain signature. 62 82 IPR023779 -
Vivi3g01107 284 SUPERFAMILY Chromo domain-like 31 97 IPR016197 -
Vivi3g01107 284 MobiDBLite consensus disorder prediction 152 183 - -
Vivi3g01107 284 SMART chromo_7 44 97 IPR000953 -
Vivi3g01107 284 MobiDBLite consensus disorder prediction 10 30 - -
Vivi3g01107 284 Pfam Chromo (CHRromatin Organisation MOdifier) domain 45 94 IPR023780 -
Vivi3g01107 284 CDD CD_CSD 58 94 - -
Vivi3g01107 284 ProSiteProfiles Chromo and chromo shadow domain profile. 45 104 IPR000953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01107 Vivi-Chr3 18518458 18522439 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01107 - - tpra:123899089 320.087