Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01105 ATGTCGCTCGCTTCCATTTCTTCCGCATTCTCCTCGTTCTCAATTTCCTCCCGTTCCACTTCACTCTCATTTTCAACTTCAATTTCTAAGAATCCCTCTTCTCAATTCCTCAAATTTCAACAACAACAACATGAAAGACCAAAAAGAGGAGTGGTTGTGATGAGTATGGAGGCAGGTGTTGGAGTCATGGGTACCAAACTCGGAATGATGAGTTTTTTCGAAACTAACGGAGAAGTTGTTCCCGTCACTATCGTCGGTTTCAGAGAAGGCAACATTGTCACTCAGATCAAAACCGACGCCACCGACGGTTACAACGCTGTCCAAATCGGTTACCGTAGGGTTAGGGACCGGAAATTGACCAAACCAGAATTGGGTCATCTTGAAAAGGCTGGAGCCATTCCGATGCGCCATCTTCAGGAGTTTCGTCTTCCAACTGTCGATGGATTTGAACCTAATCAGCGCCTTGTCTTTGATGAAATTTTCAAAGAGGGTGATCTTGTTGATATCTCTGGCACCACCATTGGCAAGGGTTTCCAAGGTGGTATCAAGCGTCATAACTTCAAGAGGGGTCCAATGAGCCATGGTTCCAAGAGTCATAGACAACTGGGTTCAATTGGTGCCGGAACTACACCTGGTAGGGTATACAAGGGGAAAAAGATGCCTGGGAGGATGGGTGGAACCAAAACCAAGATCAGAAAGCTTAAGATTGTTAAAATTGATAAAGAGCTTAATGTTATCATGATCAAAGGTGCTCTGCCTGGTAAGCCTGGAAATCTTTTGCGGATAGCTCCGGCCAAGATTGTTGGCAAGAACATTCCTAAGAATTAG 828 0.4493 MSLASISSAFSSFSISSRSTSLSFSTSISKNPSSQFLKFQQQQHERPKRGVVVMSMEAGVGVMGTKLGMMSFFETNGEVVPVTIVGFREGNIVTQIKTDATDGYNAVQIGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLPTVDGFEPNQRLVFDEIFKEGDLVDISGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKLKIVKIDKELNVIMIKGALPGKPGNLLRIAPAKIVGKNIPKN 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01105 275 Gene3D Translation factors 187 267 - -
Vivi3g01105 275 FunFam 50S ribosomal protein L3 91 155 - -
Vivi3g01105 275 PANTHER 50S RIBOSOMAL PROTEIN L3 22 267 IPR019927 GO:0003735|GO:0005840|GO:0006412
Vivi3g01105 275 FunFam 50S ribosomal protein L3, chloroplastic 187 267 - -
Vivi3g01105 275 Pfam Ribosomal protein L3 154 241 IPR000597 GO:0003735|GO:0005840|GO:0006412
Vivi3g01105 275 SUPERFAMILY Translation proteins 58 271 IPR009000 -
Vivi3g01105 275 MobiDBLite consensus disorder prediction 187 226 - -
Vivi3g01105 275 NCBIfam 50S ribosomal protein L3 61 262 IPR019927 GO:0003735|GO:0005840|GO:0006412
Vivi3g01105 275 ProSitePatterns Ribosomal protein L3 signature. 161 184 IPR019926 -
Vivi3g01105 275 Gene3D - 92 151 - -
Vivi3g01105 275 Hamap 50S ribosomal protein L3 [rplC]. 59 266 IPR019927 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01105 Vivi-Chr3 18478417 18479646 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01105 K02906 - gmx:100809897 427.172