Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01104 ATGACGATTCATTCTGCAGTGATTCAGAAGCTGCTGAGCACCAATGCCCACATCGGTCGTCAAGTCGCCACTCATCATTTCAAAGACTACACTTACGGTTTCCGCAACCGAATGGCCATTATCGATTCCGACAAGACCTTAATCTGCATGCGTAGTGCCTTCAACTTCATCTCTTCCCTCGCTCGCCAAAACGGTCGCTTCATGTTCATCAACACCAACCCTCTCTTCGACGAAATCTTCGAGCTCATGACCAAAAAAGTTGACTGCTATAGTCCTTCTTCCAATTCTCTCTGGCGCACTGGTGGATTCCTCACTAACAGTAATAGCCCTAAGAAGTTTCGCTCTCGTAACAAGAAGCTCTGCTTCGGTCCCACGCAGCCTCCTGATTGCATCGTTATTGTTGACACTGAGAGTAAGTCTTCTGTTATCGACGAGGCTTACAAACTTCAGATTCCGATTGTGGCGCTCGTTGATTCTGCCATGCCGCTTCATACTTTCAGCCGCATTGCTTATCCTATTCCTGTTAATCCCTCTGTTCAATTTGTCTATCTCTTCTGTAATTTGATTACCAAAACACTGCTTCTCGAGAAAAAGAACTTGCAGCTCTCTAATCCCAAAATTGATCTTAGAGAAGAAGCTATCAGAATTGAAGATAAGAAGCGGAAGAATAAATTGGCGAAGGTTGGCTTCACTGTTATCCCCTACGATGATTTGGCACCCTTACCTGAAGATATAGAAGAAACTAAAAAACTTTTGGACAAGCTTGTTGTTTTGAAGGTCAATCATGCCTCGGGAAGTAACATGGGTTTTGAAAACCCCAAATCTGCAATAGATATTGGTGATGGAAAGACATTTCTTGACTTGATTGTTAACCAGATTGAGACCCTCAACTCCAAGTATGGATGCCAGGTTCCATTGTTTATTTTTAACAAAGATGACACTCACGATAGTACTTTAAAGGTTTTAGAAAAGTATTCGGAATCAAGCATTGATGTGCACACTTTTAAGCAGGGTGAACATCCAGAGTTAACATTATCAGGCGAACATGGCAGCAAAGAGGAAGTGCAAACATTTGACGACGGTGATATATTTCGTTCACTAAAGATAGATGGAACCCTTGATTTATTATTGTCACAGGGAAAGGAGTATATCCTTGTGATGAAGTCAGACAATGTGGCTACTATCGTTGATCCAAATATTTTAAGTCATTTGATGACAAATACTATTGATTATTGCATGGAGGTGACACCAAGCCATTCATCTAATTTGATCTTAACTCCAATGAATTTTAAGCTTCAGGAGATTGCTCAAAACCAAGATAAACACTTGAAGGACAAATTCAAACTCATAGATACAACAAACATGTGGGTGAGTTTAAGAGCCATTAAGAGACTGATTGATACTAATAGACTAAAGCCCAAGAAGCCCTCAGTTTTGAAGGGGAGTGACAATGATCAAACTCTTCGGCAAGAAACCGTTGCTGAATCGGCAGTACAGTTCTTTGATAATGTAATTGGTGTCTCAACATCCGAATCTCGTTTTCTTCCCTTGGACGCAACCTCGGATTTACTGCTTCTACAGTCAGATCTATACACTTATAAAGAAGGTGTTTTAACTCGTAATCCTGCTAGAACCAACCCTTTAAATCCTGTGATTGACTTGGGACCGGAATTTGCAAAGATTGGTGATTTCCAAAGTCGATTCAAATCCATTCCAAGTATCATCGGGTTGGATAGTTTGGTAGTGAGAGGTGACGTGTGGTTTGGATCTAATATTACTTTAAAGGGACAAGTGACTATTGCTGCAAATCCTGGCTCAAAATTGGAAATTCCAGAAGGGGTAGTGATTGAGAATAAGGAGATCAACGACCCTGCAGATATCTAA 1884 0.4092 MTIHSAVIQKLLSTNAHIGRQVATHHFKDYTYGFRNRMAIIDSDKTLICMRSAFNFISSLARQNGRFMFINTNPLFDEIFELMTKKVDCYSPSSNSLWRTGGFLTNSNSPKKFRSRNKKLCFGPTQPPDCIVIVDTESKSSVIDEAYKLQIPIVALVDSAMPLHTFSRIAYPIPVNPSVQFVYLFCNLITKTLLLEKKNLQLSNPKIDLREEAIRIEDKKRKNKLAKVGFTVIPYDDLAPLPEDIEETKKLLDKLVVLKVNHASGSNMGFENPKSAIDIGDGKTFLDLIVNQIETLNSKYGCQVPLFIFNKDDTHDSTLKVLEKYSESSIDVHTFKQGEHPELTLSGEHGSKEEVQTFDDGDIFRSLKIDGTLDLLLSQGKEYILVMKSDNVATIVDPNILSHLMTNTIDYCMEVTPSHSSNLILTPMNFKLQEIAQNQDKHLKDKFKLIDTTNMWVSLRAIKRLIDTNRLKPKKPSVLKGSDNDQTLRQETVAESAVQFFDNVIGVSTSESRFLPLDATSDLLLLQSDLYTYKEGVLTRNPARTNPLNPVIDLGPEFAKIGDFQSRFKSIPSIIGLDSLVVRGDVWFGSNITLKGQVTIAANPGSKLEIPEGVVIENKEINDPADI 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01104 627 ProSitePatterns Ribosomal protein S2 signature 1. 8 19 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vivi3g01104 627 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 198 517 IPR029044 -
Vivi3g01104 627 FunFam UTP--glucose-1-phosphate uridylyltransferase 518 627 - -
Vivi3g01104 627 Gene3D Hexapeptide repeat proteins 518 627 - -
Vivi3g01104 627 Gene3D - 2 197 - -
Vivi3g01104 627 PRINTS Ribosomal protein S2 signature 8 26 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g01104 627 PRINTS Ribosomal protein S2 signature 128 145 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g01104 627 PRINTS Ribosomal protein S2 signature 145 156 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g01104 627 SUPERFAMILY Nucleotide-diphospho-sugar transferases 229 603 IPR029044 -
Vivi3g01104 627 PANTHER - 68 627 IPR016267 GO:0003983|GO:0006011
Vivi3g01104 627 Pfam Ribosomal protein S2 11 111 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g01104 627 Pfam Ribosomal protein S2 126 192 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g01104 627 SUPERFAMILY Ribosomal protein S2 8 200 IPR023591 -
Vivi3g01104 627 Pfam UTP--glucose-1-phosphate uridylyltransferase 228 595 IPR002618 GO:0070569
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01104 Vivi-Chr3 18463256 18473695 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01104 K00963 - gmx:100812583 892.108