Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01092 ATGGCTGCTTCGGGTATCGCTGGAGCAGGACTTACCCTTCTCAACTGCTTCTCCTCCACCGCTTCTTCTTCTTCTTCCACTCGATGCCGAACTCGTACTCTTACCATGGCTGTTTCCACCGATCACAAGCCCAAAACCACCGAAAAACTCACTCTCCGCAAGTCCGAGGAAGCTTTCGCCGCTGCAAAGGAATTGATGCCTGGAGGAGTTAACTCCCCCGTTCGTGCCTTCAAATCAGTTGGTGGACAACCCATCATCATTGACTCTGTTAAAGGCTCTCGGATGTGGGACATTGATGGTAACGAATATATTGACTACGTTGGTTCTTGGGGTCCTGCAATTATCGGTCACGCCGATGATCAGGTGCTTGCGGCTCTGTCTGAAACAATGAAGAAAGGAACTAGTTTTGGTGCACCTTGTCTTTTGGAGAACACGCTAGCGGAGATGGTTATCGCTGCCGTTCCCAGCATTGAAATGGTGAGATTTGTGAATTCAGGGACAGAAGCATGCATGGGCGCGCTTCGTCTGGCCCGTGCTTTTACTGGAAAGGAAAAGATCATCAAGTTTGAGGGATGTTATCACGGCCACGCTGATCCTTTTCTGGTTAAGGCTGGCAGTGGAGTTGCCACCCTCGGACTTCCTGATTCACCCGGTGTTCCTAAAGCTGCTACCAATGAAACACTTACGGCACCCTATAATGATATTGCTGCTGTTGAGAAGATCTTTGAGGACAACAAAGGAGATATAGCTGTTGTTTTTCTTGAACCTGTTGTTGGAAATGCTGGGTTCATTACACCGAAACCTGATTTCCTTAGTGCCTTGCGCAAAATTACTAAGGAAAATAATGCCCTTCTTGTGTTTGATGAAGTTATGACTGGATTCCGGTTGTCTTATGGAGGTGCTCAAGAATATTTTGGCATAACTCCTGATATAACTACTCTGGGGAAGATCATTGGAGGGGGTTTGCCTGTAGGTGCATATGGAGGTAGGAGGGATATTATGGAGACGGTTGCTCCGGCTGGACCTATGTACCAGGCTGGGACATTGAGTGGGAATCCTTTAGCCATGACTGCAGGCATACAGACTCTGAAGCGTATTAAGGAGGCAGGAACATACGAATACTTGGACAACATTACAGGTGAACTTGTTCAAGGAATTGTTGAAGCTGGGAAGAAGGCGGGGCATGCAATGTGTGGTGGGCATATAAATGGGATGTTTGGGTTTTTCTTTACAGAAGGACCCGTGTACAATTTTACAGATGCAAAAAAGAGTGACACTGAGAAGTTTGCTAAGTTTTTCTGGGGTATGTTAGCAGAAGGTGTTTATTTGGCACCTTCACAGTTTGAGGCTGGGTTCACTAGTTTGGCGCATACTTCTGATGACATCAAGAAGACTATTGCGGCTGCTGAGAGGGTCTTCAGGGAGATCTGA 1431 0.4703 MAASGIAGAGLTLLNCFSSTASSSSSTRCRTRTLTMAVSTDHKPKTTEKLTLRKSEEAFAAAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSRMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALSETMKKGTSFGAPCLLENTLAEMVIAAVPSIEMVRFVNSGTEACMGALRLARAFTGKEKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATNETLTAPYNDIAAVEKIFEDNKGDIAVVFLEPVVGNAGFITPKPDFLSALRKITKENNALLVFDEVMTGFRLSYGGAQEYFGITPDITTLGKIIGGGLPVGAYGGRRDIMETVAPAGPMYQAGTLSGNPLAMTAGIQTLKRIKEAGTYEYLDNITGELVQGIVEAGKKAGHAMCGGHINGMFGFFFTEGPVYNFTDAKKSDTEKFAKFFWGMLAEGVYLAPSQFEAGFTSLAHTSDDIKKTIAAAERVFREI 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01092 476 CDD OAT_like 59 473 IPR005814 GO:0008483|GO:0030170
Vivi3g01092 476 NCBIfam glutamate-1-semialdehyde 2,1-aminomutase 54 475 IPR004639 GO:0033014|GO:0042286
Vivi3g01092 476 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 285 321 IPR005814 GO:0008483|GO:0030170
Vivi3g01092 476 Gene3D - 120 368 IPR015421 GO:0003824
Vivi3g01092 476 PANTHER GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE 38 475 - -
Vivi3g01092 476 FunFam Glutamate-1-semialdehyde 2,1-aminomutase 120 368 - -
Vivi3g01092 476 FunFam Glutamate-1-semialdehyde 2,1-aminomutase 363 469 - -
Vivi3g01092 476 Gene3D Aspartate Aminotransferase, domain 1 57 469 IPR015422 GO:0003824
Vivi3g01092 476 SUPERFAMILY PLP-dependent transferases 53 475 IPR015424 -
Vivi3g01092 476 Hamap Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 54 476 IPR004639 GO:0033014|GO:0042286
Vivi3g01092 476 Pfam Aminotransferase class-III 84 393 IPR005814 GO:0008483|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01092 Vivi-Chr3 18366327 18368284 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01092 K01845 - gmx:100790574 821.231